JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MEGF8_chr19_42320635_42383765	0/0	c0027	8538	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0028	8538	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0029	8538	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0030	8538	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0031	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0032	8538	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0033	8538	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0034	8538	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0035	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0036	8538	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	c0037	8538	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF9_chr9_120595811_120719470	1/0	c0001	1809	136	33	21	69	2	10	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/1	c0002	1803	120	27	20	61	2	9	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0003	1803	23	22	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0004	1803	4	4	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0005	1809	2	0	1	0	1	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0006	1809	1	0	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0007	1809	1	0	0	0	0	1	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0008	1803	1	0	0	0	1	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0009	1803	1	1	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	c0010	1803	1	1	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEI1_chr22_41694503_41804454	0/1	c0001	3825	121	15	22	58	9	16	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	1/0	c0002	3825	49	2	21	13	3	9	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0003	3825	20	17	3	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0004	3825	16	16	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0005	3825	13	1	4	7	0	1	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0006	3825	9	8	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0007	3825	5	5	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0008	3825	5	5	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0009	3825	5	4	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0010	3825	3	2	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0011	3825	2	2	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0012	3825	2	2	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0013	3825	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0014	3825	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0015	3825	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0016	3825	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0017	3825	1	0	0	1	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0018	3825	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0019	3825	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0020	3825	1	0	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0021	3825	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	c0022	3825	1	0	0	1	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI4_chr6_77648039_77932045	1/1	c0001	1158	303	68	65	134	12	22	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0002	1158	32	7	3	20	0	2	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0003	1158	7	6	1	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0004	1158	7	0	0	7	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0005	1158	3	3	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0006	1158	3	0	0	3	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	c0007	1158	2	2	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045