JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPP4_chr2_201639874_201703644	0/0	c0003	1914	14	14	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0004	1914	13	0	0	13	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0005	1914	4	4	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0006	1914	4	0	0	4	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0007	1914	2	2	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0008	1914	2	2	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0009	1914	1	1	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0010	1914	1	0	0	0	0	1	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0011	1914	1	0	0	1	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0012	1914	1	0	0	1	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0013	1914	1	0	1	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0014	1914	1	0	0	0	0	1	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0015	1914	1	1	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0016	1914	1	1	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0017	1914	1	1	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0018	1914	1	0	0	1	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0019	1914	1	0	0	0	0	1	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	1/0	c0020	1914	1	0	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP7_chr10_28045993_28308064	0/1	c0001	1731	180	62	37	53	3	24	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0002	1731	45	9	6	27	0	3	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0003	1731	33	4	1	27	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	1/0	c0004	1731	24	5	5	7	1	5	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0005	1731	7	0	7	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0006	1731	3	0	3	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0007	1731	2	2	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0008	1731	2	0	0	0	0	2	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0009	1731	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0010	1731	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0011	1731	1	0	1	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	c0012	1731	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPPE1_chr18_11877622_11913317	0/0	c0001	1191	216	59	26	111	2	18	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	1/1	c0002	1191	177	22	41	68	13	31	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0003	1191	22	11	1	10	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0004	1191	16	0	7	9	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0005	1191	6	4	0	2	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0006	1191	4	0	0	4	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0007	1191	2	0	2	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0008	1191	2	0	0	0	2	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0009	1191	2	0	2	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0010	1191	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0012	1191	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0013	1191	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0014	1191	1	0	0	0	1	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0015	1191	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0016	1191	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0017	1191	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	c0018	1191	1	0	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPED1_chr22_43407014_43512848	1/0	c0001	981	122	30	28	48	5	10	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/1	c0002	981	64	13	16	12	6	16	copy fasta	MPPED1	chr22	43407014	43512848