JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANO2_chr12_5557655_5950259	0/0	c0010	2997	2	2	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0011	2997	2	0	0	1	1	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0012	2997	2	2	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0013	2997	2	0	2	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0014	2997	2	2	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0015	2997	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0016	2997	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0017	2997	1	0	0	0	0	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0018	2997	1	0	1	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0019	2997	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0020	2997	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0021	2997	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0022	2997	1	0	0	1	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0023	2997	1	0	0	0	0	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0024	2997	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0025	2997	1	0	0	1	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0026	2997	1	1	0	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO3_chr11_26327130_26668289	0/0	c0001	2946	37	18	11	7	0	1	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/1	c0002	2946	32	11	2	13	1	4	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0003	2946	25	8	6	6	0	5	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0004	2946	25	1	8	15	1	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0005	2946	20	7	7	1	0	5	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0006	2946	18	4	4	5	0	5	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	1/0	c0007	2946	15	11	2	1	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0008	2946	5	4	1	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0009	2946	5	0	0	4	0	1	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0010	2946	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0011	2946	1	0	1	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0012	2946	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0013	2946	1	0	0	1	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0014	2946	1	0	0	0	0	1	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0015	2946	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0016	2946	1	0	0	1	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO3_chr11_26327130_26668289	0/0	c0017	2946	1	1	0	0	0	0	copy fasta	ANO3	chr11	26327130	26668289
ANO4_chr12_100789776_101133629	1/0	c0001	2868	154	48	37	49	8	11	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0002	2868	30	3	3	19	0	5	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/1	c0003	2868	28	19	4	0	4	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0004	2868	9	2	2	4	0	1	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0005	2868	4	0	0	4	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0006	2868	2	2	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0007	2868	2	2	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0008	2868	1	0	0	1	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0009	2868	1	0	0	1	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0010	2868	1	0	0	0	0	1	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0011	2868	1	0	0	1	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0012	2868	1	0	0	1	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0013	2868	1	1	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO4_chr12_100789776_101133629	0/0	c0014	2868	1	1	0	0	0	0	copy fasta	ANO4	chr12	100789776	101133629
ANO5_chr11_22188085_22288357	0/0	c0001	2742	159	53	20	75	2	9	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	1/1	c0002	2742	84	3	12	59	2	6	copy fasta	ANO5	chr11	22188085	22288357