JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MSANTD2_chr11_124761498_124805406	0/0	c0005	1680	1	0	0	0	0	1	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	c0006	1680	1	1	0	0	0	0	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD2_chr11_124761498_124805406	0/0	c0007	1680	1	1	0	0	0	0	copy fasta	MSANTD2	chr11	124761498	124805406
MSANTD3_chr9_100422143_100456734	1/0	c0001	828	302	87	44	124	7	39	copy fasta	MSANTD3	chr9	100422143	100456734
MSANTD3_chr9_100422143_100456734	0/1	c0002	828	23	3	11	0	5	3	copy fasta	MSANTD3	chr9	100422143	100456734
MSANTD3_chr9_100422143_100456734	0/0	c0003	828	1	0	1	0	0	0	copy fasta	MSANTD3	chr9	100422143	100456734
MSANTD3_chr9_100422143_100456734	0/0	c0004	828	1	0	0	1	0	0	copy fasta	MSANTD3	chr9	100422143	100456734
MSANTD3_chr9_100422143_100456734	0/0	c0005	828	1	0	0	1	0	0	copy fasta	MSANTD3	chr9	100422143	100456734
MSANTD4_chr11_106002899_106027240	1/1	c0001	1038	380	89	66	172	15	36	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD4_chr11_106002899_106027240	0/0	c0002	1038	2	0	0	2	0	0	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD4_chr11_106002899_106027240	0/0	c0003	1038	1	0	0	0	1	0	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD4_chr11_106002899_106027240	0/0	c0004	1038	1	1	0	0	0	0	copy fasta	MSANTD4	chr11	106002899	106027240
MSANTD5_chr5_178689572_178702761	0/0	c0001	642	173	23	41	80	7	22	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0002	642	106	5	14	66	4	17	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0003	642	56	34	18	0	3	1	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	1/1	c0004	642	54	4	3	37	2	6	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0005	642	17	16	1	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0006	642	9	0	0	8	0	1	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0007	642	4	4	0	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0008	642	4	3	1	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0009	642	3	3	0	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0010	642	1	1	0	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0011	642	1	0	0	0	0	1	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0012	642	1	1	0	0	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD5_chr5_178689572_178702761	0/0	c0013	642	1	0	0	1	0	0	copy fasta	MSANTD5	chr5	178689572	178702761
MSANTD7_chr10_14833306_14851999	1/1	c0001	1086	378	93	52	182	14	35	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	c0002	1086	16	1	9	0	1	5	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	c0003	1086	4	0	2	1	1	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	c0004	1086	2	0	0	0	0	2	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	c0005	1086	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	c0006	1086	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	c0007	1086	1	0	0	1	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSANTD7_chr10_14833306_14851999	0/0	c0008	1086	1	0	1	0	0	0	copy fasta	MSANTD7	chr10	14833306	14851999
MSC_chr8_71836560_71849412	1/1	c0001	621	469	96	74	232	18	47	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	c0002	621	2	2	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	c0003	621	1	0	0	0	0	1	copy fasta	MSC	chr8	71836560	71849412
MSGN1_chr2_17811460_17822798	1/0	c0001	582	253	67	45	111	9	20	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/1	c0002	582	76	17	22	5	9	22	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	c0003	582	8	8	0	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	c0004	582	3	3	0	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	c0005	582	3	1	0	0	0	2	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	c0006	582	2	0	2	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	c0007	582	1	0	0	1	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	c0008	582	1	0	1	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	c0009	582	1	0	0	1	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSH2_chr2_47398156_47488223	1/1	c0001	2805	319	58	62	153	12	32	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0002	2805	12	11	1	0	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0003	2805	12	12	0	0	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0004	2805	3	0	0	3	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	c0005	2805	3	0	0	3	0	0	copy fasta	MSH2	chr2	47398156	47488223