JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANO5_chr11_22188085_22288357	0/0	c0003	2742	74	5	19	36	2	12	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0004	2742	9	9	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0005	2742	6	6	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0006	2742	5	4	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0007	2742	4	4	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0008	2742	4	0	4	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0009	2742	4	4	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0010	2742	3	3	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0011	2742	2	2	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0012	2742	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0013	2742	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0014	2742	1	0	0	0	0	1	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0015	2742	1	0	0	0	0	1	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0016	2742	1	0	0	0	0	1	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0017	2742	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0018	2029	1	0	0	1	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0019	2742	1	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0020	2742	1	0	1	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO5_chr11_22188085_22288357	0/0	c0021	2742	1	1	0	0	0	0	copy fasta	ANO5	chr11	22188085	22288357
ANO6_chr12_45211095_45437349	1/0	c0001	2733	199	43	31	111	2	11	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0002	2733	9	7	2	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0003	2733	4	4	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0004	2733	3	3	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0005	2733	3	3	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0006	2733	3	3	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0007	2733	3	2	1	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0008	2733	2	2	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0009	2733	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0010	2733	1	0	0	0	0	1	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0011	2733	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0012	2733	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0013	2733	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0014	2672	1	0	0	1	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/1	c0015	2733	1	0	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO6_chr12_45211095_45437349	0/0	c0016	2733	1	1	0	0	0	0	copy fasta	ANO6	chr12	45211095	45437349
ANO7_chr2_241183677_241230976	1/0	c0001	2640	79	8	6	47	3	14	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0002	2640	37	3	0	32	0	2	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0003	2640	30	5	7	11	1	6	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0004	2640	25	4	3	14	0	4	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0005	2640	22	0	13	9	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0006	2638	13	12	1	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0007	2640	13	3	8	0	2	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0008	2640	12	0	2	7	0	3	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0009	2640	11	0	0	11	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0010	2640	11	1	10	0	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0011	2640	10	4	3	0	3	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0012	2640	9	0	1	8	0	0	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/1	c0013	2640	9	2	3	0	1	2	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0014	2640	8	1	3	0	2	2	copy fasta	ANO7	chr2	241183677	241230976
ANO7_chr2_241183677_241230976	0/0	c0015	2640	7	0	1	6	0	0	copy fasta	ANO7	chr2	241183677	241230976