JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MTA1_chr14_105414827_105475729	0/0	c0009	2148	3	2	1	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0010	2148	3	3	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0011	2148	2	0	0	1	1	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0012	2148	2	1	1	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0013	2148	2	1	1	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0014	2148	1	1	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0015	2148	1	0	0	1	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0016	2148	1	0	0	1	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0017	2148	1	0	0	0	0	1	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0018	2148	1	1	0	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA1_chr14_105414827_105475729	0/0	c0019	2148	1	0	1	0	0	0	copy fasta	MTA1	chr14	105414827	105475729
MTA2_chr11_62588214_62606865	1/1	c0001	2007	357	85	72	153	10	35	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	c0002	2007	1	0	1	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	c0003	2007	1	0	1	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	c0004	2007	1	0	0	1	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	c0005	2007	1	0	0	0	0	1	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	c0006	2007	1	1	0	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA3_chr2_42563632_42761946	1/1	c0001	1785	299	66	71	104	16	40	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0002	1785	5	5	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0003	1785	1	0	1	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0004	1785	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0005	1785	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0006	1785	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0007	1785	1	1	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0008	1785	1	0	1	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0009	1785	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	c0010	1785	1	0	1	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTAP_chr9_21797636_21872081	1/0	c0001	852	222	45	35	107	10	24	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/1	c0002	852	129	44	22	46	4	12	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0003	852	16	0	1	14	0	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0004	852	6	0	3	0	2	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0005	852	2	0	0	0	0	2	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0006	852	2	0	0	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0007	852	2	2	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0008	852	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0009	852	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	c0010	852	1	0	1	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTARC1_chr1_220781913_220824659	0/1	c0001	1014	304	84	54	115	13	37	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	1/0	c0002	1014	65	5	16	38	1	4	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	c0003	1014	18	2	5	10	1	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	c0004	1014	14	0	0	14	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	c0005	1014	10	0	1	9	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	c0006	1014	3	3	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	c0007	1014	2	1	0	0	1	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	c0008	1014	1	1	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	c0009	1014	1	0	0	0	0	1	copy fasta	MTARC1	chr1	220781913	220824659
MTARC2_chr1_220743322_220789815	1/1	c0001	1008	255	59	39	118	7	30	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0002	1008	74	1	17	44	4	8	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0003	1008	15	0	0	13	1	1	copy fasta	MTARC2	chr1	220743322	220789815
MTARC2_chr1_220743322_220789815	0/0	c0004	1008	14	8	1	5	0	0	copy fasta	MTARC2	chr1	220743322	220789815