JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
N4BP2_chr4_40051850_40163252	0/0	c0009	5313	3	0	1	0	1	1	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0010	5313	2	0	0	2	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0011	5313	2	0	1	0	0	1	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0012	5313	2	1	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0013	5313	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0014	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0015	5313	1	0	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0016	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0017	5313	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0018	5313	1	0	0	0	1	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0019	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0020	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0021	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0022	5313	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0023	5313	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0024	5313	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0025	5313	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0026	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0027	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0028	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0029	5313	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	c0030	5313	1	0	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP3_chr5_178108532_178131081	0/0	c0001	1635	353	86	57	160	11	39	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/1	c0002	1635	59	4	16	28	3	7	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0003	1635	9	1	1	5	1	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0004	1635	3	0	2	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0005	1635	2	2	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0006	1635	2	0	1	0	1	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0007	1635	1	0	1	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0008	1635	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0009	1635	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0010	1635	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0011	1635	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0012	1635	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	1/0	c0013	1635	1	0	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	c0014	1635	1	0	0	0	0	1	copy fasta	N4BP3	chr5	178108532	178131081
N6AMT1_chr21_28867191_28890367	0/1	c0001	645	211	52	35	88	7	28	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	1/0	c0002	645	129	20	25	81	0	2	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	c0003	645	61	6	14	30	3	8	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	c0004	645	15	15	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	c0005	645	2	0	2	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	c0006	645	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	c0007	645	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	c0008	645	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	c0009	645	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
NAA10_chrX_153924225_153940037	1/1	c0001	708	289	76	49	127	7	28	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	c0002	710	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	c0003	713	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	c0004	709	1	0	1	0	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA11_chr4_79311647_79331061	1/1	c0001	690	385	80	64	187	16	36	copy fasta	NAA11	chr4	79311647	79331061