JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBAS_chr2_15161916_15566334	0/0	c0009	7116	4	0	0	4	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0010	7116	3	1	1	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0011	7116	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0012	7116	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0013	7116	2	0	1	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0014	7116	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0015	7116	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0016	7116	2	2	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0017	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0018	7116	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0019	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0020	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0021	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0022	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0023	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0024	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0025	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0026	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0027	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0028	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0029	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0030	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0031	7116	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0032	7116	1	0	0	0	1	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0033	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0034	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0035	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0036	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0037	7116	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0038	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0039	7116	1	0	0	0	0	1	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0040	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0041	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0042	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0043	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0044	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0045	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0046	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0047	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0048	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0049	7116	1	1	0	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0050	7116	1	0	1	0	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0051	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0052	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBAS_chr2_15161916_15566334	0/0	c0053	7116	1	0	0	1	0	0	copy fasta	NBAS	chr2	15161916	15566334
NBDY_chrX_56724243_56824179	1/1	c0001	207	160	51	24	61	4	18	copy fasta	NBDY	chrX	56724243	56824179
NBEAL1_chr2_203009875_203230194	0/0	c0001	8172	181	31	36	91	3	20	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	1/0	c0002	8172	32	15	4	10	0	2	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0003	8172	19	15	4	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0004	8172	9	0	5	0	4	0	copy fasta	NBEAL1	chr2	203009875	203230194