JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NBEAL1_chr2_203009875_203230194	0/0	c0005	8172	7	0	0	7	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/1	c0006	8172	5	0	2	0	0	2	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0007	8172	4	4	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0008	8172	4	0	0	4	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0009	8172	3	3	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0010	8172	2	0	0	0	2	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0011	8172	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0012	8172	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0013	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0014	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0015	8172	1	0	0	0	1	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0016	8172	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0017	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0018	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0019	8172	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0020	8172	1	0	0	0	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0021	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0022	8172	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0023	8172	1	0	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0024	8172	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0025	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0026	8172	1	0	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0027	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0028	8172	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0029	8172	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0030	8172	1	0	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0031	8172	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0032	7741	1	0	0	0	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0033	8172	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	c0034	8146	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL2_chr3_46974666_47014701	0/0	c0001	8265	96	15	19	45	4	13	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0002	8265	94	14	15	49	2	14	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0003	8265	42	1	10	23	2	6	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	1/0	c0004	8265	40	36	3	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0005	8265	27	1	5	19	1	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0006	8265	4	4	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0007	8265	4	0	0	4	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0008	8265	4	0	0	4	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0009	8265	3	3	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0010	8265	2	1	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0011	8265	2	2	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/1	c0012	8265	2	0	1	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0013	8265	2	0	1	0	1	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0014	8265	2	0	0	0	1	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0015	8265	2	0	2	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0016	8265	2	0	0	0	0	2	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0017	8265	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0018	8265	1	0	0	0	0	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0019	8265	1	1	0	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	c0020	8265	1	0	0	1	0	0	copy fasta	NBEAL2	chr3	46974666	47014701