JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NHERF4_chr11_119180475_119195213	0/0	c0001	1518	277	60	34	145	7	31	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	1/1	c0002	1518	128	31	44	33	9	9	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0003	1518	6	0	0	0	0	6	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0004	1518	2	2	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0005	1518	2	2	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0006	1518	1	1	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0007	1518	1	1	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0008	1518	1	1	0	0	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0009	1518	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0010	1518	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0011	1518	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHERF4_chr11_119180475_119195213	0/0	c0012	1518	1	0	0	1	0	0	copy fasta	NHERF4	chr11	119180475	119195213
NHLH1_chr1_160362071_160377846	1/1	c0001	402	454	96	84	215	14	43	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	c0002	402	3	0	0	0	0	3	copy fasta	NHLH1	chr1	160362071	160377846
NHLH1_chr1_160362071_160377846	0/0	c0003	402	1	0	0	1	0	0	copy fasta	NHLH1	chr1	160362071	160377846
NHLH2_chr1_115831377_115846126	1/1	c0001	408	438	98	74	202	16	46	copy fasta	NHLH2	chr1	115831377	115846126
NHLRC1_chr6_18115440_18127677	1/1	c0001	1188	256	49	34	136	11	24	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	c0002	1188	153	19	31	83	1	19	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	c0003	1188	54	26	15	4	4	5	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	c0004	1188	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	c0005	1188	1	1	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	c0006	1188	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	c0008	1188	1	1	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC2_chr10_113849661_113922194	1/1	c0001	2181	236	62	39	99	11	23	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0002	2181	86	13	20	40	5	8	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0003	2181	9	9	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0004	2181	6	0	0	6	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0005	2181	3	3	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0006	2181	2	0	0	2	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0007	2181	2	0	0	0	0	2	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0008	2181	2	0	0	0	0	2	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0009	2181	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0010	2181	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0011	2181	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0012	2181	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0013	2181	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0014	2181	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0015	2181	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0016	2181	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0017	2181	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0018	2181	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0019	2181	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	c0020	2181	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC3_chr13_39033456_39055109	1/1	c0001	1044	393	86	77	167	16	45	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	c0002	1044	5	5	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	c0003	1044	4	4	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	c0004	1044	2	0	1	0	0	1	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	c0005	1044	1	1	0	0	0	0	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	c0006	1044	1	0	0	1	0	0	copy fasta	NHLRC3	chr13	39033456	39055109