JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APEX2_chrX_54995363_55014057	1/0	c0001	1557	255	63	51	108	9	23	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0002	1557	16	0	0	16	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0003	1557	13	5	2	5	0	1	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0004	1557	3	0	0	0	0	3	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0005	1557	2	2	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0006	1557	2	0	2	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0007	1557	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/1	c0008	1557	1	0	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0009	1557	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0010	1557	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0011	1557	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0012	1557	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0013	1557	1	0	0	0	0	1	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0014	1557	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0015	1558	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0016	1557	1	0	0	1	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0017	1557	1	0	1	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APEX2_chrX_54995363_55014057	0/0	c0018	1557	1	1	0	0	0	0	copy fasta	APEX2	chrX	54995363	55014057
APH1A_chr1_150260404_150274016	1/1	c0001	798	407	93	68	182	16	46	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	c0002	798	30	0	8	22	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1A_chr1_150260404_150274016	0/0	c0003	798	3	3	0	0	0	0	copy fasta	APH1A	chr1	150260404	150274016
APH1B_chr15_63272605_63314126	1/0	c0001	774	338	93	57	144	8	35	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0002	774	63	4	11	46	1	1	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/1	c0003	774	7	0	4	0	2	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0004	774	6	0	0	0	0	6	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0005	774	2	2	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0006	774	2	0	0	0	2	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0007	774	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0008	774	1	1	0	0	0	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0009	774	1	0	0	0	1	0	copy fasta	APH1B	chr15	63272605	63314126
APH1B_chr15_63272605_63314126	0/0	c0010	774	1	0	0	1	0	0	copy fasta	APH1B	chr15	63272605	63314126
API5_chr11_43306996_43349529	1/1	c0001	1575	377	89	66	160	16	44	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	c0002	1575	6	0	0	6	0	0	copy fasta	API5	chr11	43306996	43349529
API5_chr11_43306996_43349529	0/0	c0003	1575	1	1	0	0	0	0	copy fasta	API5	chr11	43306996	43349529
APIP_chr11_34877295_34921379	0/1	c0001	729	168	59	28	56	4	20	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	c0002	729	152	16	31	86	4	15	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	c0003	729	17	2	7	0	2	6	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	c0004	729	8	8	0	0	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	c0005	729	6	6	0	0	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	c0006	729	2	0	0	2	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	c0007	729	1	1	0	0	0	0	copy fasta	APIP	chr11	34877295	34921379
APIP_chr11_34877295_34921379	0/0	c0008	729	1	0	0	0	0	1	copy fasta	APIP	chr11	34877295	34921379
APLF_chr2_68462585_68585162	1/1	c0001	1536	83	25	18	20	3	15	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0002	1536	38	32	6	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0003	1536	21	14	5	0	1	1	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0004	1536	13	0	2	7	2	2	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0005	1533	5	0	3	0	0	2	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0006	1536	4	4	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0007	1536	4	4	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162
APLF_chr2_68462585_68585162	0/0	c0008	1536	1	1	0	0	0	0	copy fasta	APLF	chr2	68462585	68585162