JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NIPSNAP3B_chr9_104759129_104782764	0/0	c0006	744	2	2	0	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0007	744	2	2	0	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0008	744	1	0	1	0	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0009	744	1	0	0	0	0	1	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0010	744	1	0	0	0	0	1	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NIPSNAP3B_chr9_104759129_104782764	0/0	c0011	744	1	0	0	1	0	0	copy fasta	NIPSNAP3B	chr9	104759129	104782764
NISCH_chr3_52450604_52498068	0/1	c0001	4515	187	12	43	100	6	25	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0002	4515	36	22	9	0	3	2	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0003	4515	15	15	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0004	4515	12	12	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0005	4515	11	6	2	0	0	3	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0006	4515	9	9	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0007	4515	7	1	2	3	1	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0008	4515	3	0	0	3	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0009	4515	3	0	0	3	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0010	4515	3	2	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0011	4515	2	0	0	0	0	2	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0012	4515	2	2	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0013	4515	2	0	0	2	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0014	4515	2	0	0	1	0	1	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	1/0	c0015	4515	2	0	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0016	4515	1	0	0	0	0	1	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0017	4515	1	0	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0018	4515	1	0	0	1	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0019	4515	1	0	0	1	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0020	4515	1	0	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0021	4515	1	0	0	0	0	1	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0022	4515	1	0	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0023	4515	1	1	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0024	4515	1	0	0	0	0	1	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0025	4515	1	1	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0026	4515	1	0	1	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	c0027	4515	1	1	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NIT1_chr1_161113105_161126194	1/1	c0001	984	288	49	51	151	16	19	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0002	984	42	15	4	21	2	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0003	984	2	0	2	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0004	984	1	0	1	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0005	984	1	0	1	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0006	984	1	0	0	1	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0007	984	1	0	1	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0008	984	1	0	0	1	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	c0009	984	1	0	0	0	0	1	copy fasta	NIT1	chr1	161113105	161126194
NIT2_chr3_100329757_100366635	0/0	c0001	831	391	77	72	184	12	46	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	c0002	831	3	3	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	c0003	831	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	c0004	831	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NKAIN1_chr1_31174745_31244887	1/1	c0001	624	329	77	68	132	14	36	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	c0002	624	7	7	0	0	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	c0003	624	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887
NKAIN1_chr1_31174745_31244887	0/0	c0004	624	1	0	0	1	0	0	copy fasta	NKAIN1	chr1	31174745	31244887