JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLGN4X_chrX_5885042_6233867	0/0	c0005	2451	1	0	0	1	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	c0006	2451	1	0	0	0	0	1	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	c0007	2452	1	0	0	1	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	c0008	2451	1	0	0	0	1	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4Y_chrY_14519529_14850654	1/1	c0001	2511	118	18	20	58	5	15	copy fasta	NLGN4Y	chrY	14519529	14850654
NLGN4Y_chrY_14519529_14850654	0/0	c0002	2511	2	0	0	2	0	0	copy fasta	NLGN4Y	chrY	14519529	14850654
NLGN4Y_chrY_14519529_14850654	0/0	c0003	2511	1	0	0	1	0	0	copy fasta	NLGN4Y	chrY	14519529	14850654
NLK_chr17_28037677_28201381	1/1	c0001	1584	99	37	16	32	4	8	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	c0002	1584	4	4	0	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	c0003	1584	2	0	2	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	c0004	1584	1	1	0	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	c0005	1584	1	1	0	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	c0006	1584	1	1	0	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLN_chr5_65717205_65834283	0/1	c0001	2115	204	52	42	74	10	25	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	1/0	c0002	2115	81	1	21	48	4	6	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0003	2115	14	11	2	0	0	1	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0004	2115	10	9	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0005	2115	7	6	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0006	2115	6	6	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0007	2115	3	0	0	3	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0008	2115	2	2	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0009	2115	2	1	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0010	2115	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0011	2115	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0012	2115	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0013	2115	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0014	2115	1	0	0	1	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0015	2115	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	c0016	2115	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLRC3_chr16_3534033_3582403	0/0	c0001	3198	100	14	13	53	4	16	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0002	3198	93	19	20	44	2	8	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	1/1	c0003	3198	63	5	18	32	4	2	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0004	3198	29	10	3	10	1	5	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0005	3198	23	0	5	13	2	3	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0006	3198	13	13	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0007	3198	13	0	10	3	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0008	3198	5	5	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0009	3198	5	5	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0010	3198	5	5	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0011	3198	3	1	2	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0012	3198	3	2	1	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0013	3198	3	0	0	3	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0014	3198	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0015	3198	2	0	0	0	0	2	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0016	3198	2	2	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0017	3198	2	0	0	2	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0018	3198	2	0	0	2	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0019	3198	1	0	0	0	0	1	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0020	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403
NLRC3_chr16_3534033_3582403	0/0	c0021	3198	1	1	0	0	0	0	copy fasta	NLRC3	chr16	3534033	3582403