JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPA7_chr16_16374140_16398972	0/0	c0003	1110	11	0	2	9	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0004	1110	7	0	0	4	0	3	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0005	1110	4	0	0	1	1	2	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0006	1110	2	1	1	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0007	1110	2	2	0	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0008	1110	2	0	0	2	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0009	1110	1	1	0	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0010	1110	1	0	0	0	0	1	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0011	1110	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0012	1110	1	0	0	0	0	1	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0013	1110	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0014	1110	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0015	1041	1	0	1	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0016	1041	1	0	0	1	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0017	1110	1	0	1	0	0	0	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA8_chr16_18312919_18341736	0/0	c0001	1110	16	1	4	10	1	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0002	1110	9	5	0	4	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0003	1110	3	0	1	2	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0004	1110	3	0	0	3	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0005	1110	2	0	1	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0006	1110	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0007	1110	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0008	1110	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0009	1110	1	1	0	0	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0010	1110	1	0	0	0	1	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0011	1110	1	1	0	0	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	c0012	1110	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPB11_chr16_29376310_29411711	0/0	c0001	3234	55	12	11	23	1	8	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0002	2925	41	0	5	35	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0003	3486	40	3	1	34	0	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/1	c0004	3234	13	0	7	0	3	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0005	3234	12	12	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0006	3234	11	2	9	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0007	2856	8	0	4	0	3	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0008	3486	7	0	0	7	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0009	3234	7	0	0	7	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0010	3108	7	6	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0011	3108	7	0	2	0	2	3	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0012	3360	5	0	1	4	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0013	3612	5	0	0	5	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0014	3234	5	0	0	5	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0015	3234	5	0	4	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0016	2799	5	5	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0017	3234	4	0	0	3	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0018	3108	4	1	2	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0019	3234	4	1	0	3	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0020	2982	4	4	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0021	2982	3	0	3	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0022	3486	3	0	0	3	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0023	2913	3	0	3	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711