JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB11_chr16_29376310_29411711	0/0	c0024	3234	3	3	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0025	3429	3	0	0	0	0	3	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0026	3177	3	0	3	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	1/0	c0027	3486	3	1	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0028	2799	3	3	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0029	3234	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0030	2673	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0031	2982	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0032	3483	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0033	3234	2	0	1	0	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0034	3234	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0035	3361	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0036	3108	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0037	3234	2	0	0	0	0	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0038	3360	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0039	2982	2	1	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0040	3108	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0041	3108	2	0	0	0	0	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0042	3231	2	0	1	0	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0043	2547	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0044	2799	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0045	2925	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0046	2673	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0047	3360	2	0	2	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0048	3234	2	0	0	0	0	2	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0049	3108	2	0	2	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0050	3360	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0051	3486	2	0	0	2	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0052	2975	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0053	3486	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0054	3486	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0055	3234	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0056	2925	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0057	3361	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0058	3234	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0059	3222	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0060	3234	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0061	3483	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0062	3483	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0063	3360	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0064	2856	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0065	3108	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0066	3108	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0067	3486	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0068	3360	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0069	3486	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0070	2353	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0071	3360	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0072	3234	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0073	3360	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711