JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB11_chr16_29376310_29411711	0/0	c0124	2925	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0125	3012	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0126	2925	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0127	2925	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0128	3051	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0129	3051	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0130	2925	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0131	3051	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0132	2547	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0133	2925	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0134	2547	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0135	3165	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0136	3234	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0137	2730	1	0	0	0	1	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0138	2982	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0139	2982	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0140	3234	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0141	3234	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0142	3360	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0143	3234	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0144	3360	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0145	3247	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0146	3108	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0147	2982	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0148	3234	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0149	3361	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0150	2925	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0151	3051	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0152	3556	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0153	3304	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0154	3304	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0155	2534	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0156	3234	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0157	2799	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0158	2982	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0159	3234	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	c0160	2925	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB12_chr16_29478534_29511408	0/0	c0001	3039	4	0	3	0	1	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0002	2913	3	0	3	0	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0003	2787	2	0	1	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0004	2787	2	0	2	0	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0005	2913	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0006	2913	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0007	2302	1	0	0	0	1	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0008	2787	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0009	2913	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	1/0	c0010	2787	1	0	0	0	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0011	3039	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0012	3039	1	0	1	0	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	c0013	2541	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408