JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OBSCN_chr1_228203044_228383876	0/0	c0170	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0171	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0172	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0173	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0174	26778	1	0	0	0	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0175	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0176	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0177	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0178	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0179	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0180	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0181	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0182	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0183	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0184	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0185	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0186	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0187	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0188	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0189	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0190	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0191	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0192	26778	1	0	0	0	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0193	26778	1	0	0	0	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0194	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0195	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0196	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0197	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0198	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0199	26778	1	0	0	0	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0200	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0201	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0202	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0203	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0204	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0205	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0206	26778	1	0	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0207	26778	1	1	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	c0208	26778	1	0	0	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSL1_chr2_219545728_219576539	0/1	c0001	5691	58	0	5	38	4	10	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0002	5691	47	0	16	23	3	5	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0003	5691	45	12	9	19	1	4	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0004	5691	35	6	7	12	3	7	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0005	5691	22	0	9	2	1	10	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0006	5691	9	0	4	5	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0007	5691	8	0	0	8	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	1/0	c0008	5691	7	6	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0009	5691	6	6	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0010	5691	6	0	0	6	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0011	5691	6	2	3	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539