JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OBSL1_chr2_219545728_219576539	0/0	c0062	5691	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0063	5691	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0064	5691	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0065	5691	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0066	5691	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0067	5691	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0068	5691	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0069	5691	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0070	5691	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0071	5691	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0072	5691	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0073	5691	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0074	5691	1	0	0	0	1	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0075	5691	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0076	5691	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0077	5691	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0078	5691	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0079	5691	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0080	5691	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0081	5691	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0082	5691	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0083	5691	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0084	5691	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	c0085	5691	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OC90_chr8_132019216_132064382	0/1	c0001	1434	167	27	33	89	5	12	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0002	1434	99	9	16	56	5	13	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	1/0	c0003	1434	74	22	20	19	3	9	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0004	1434	14	0	0	13	1	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0005	1434	13	7	1	0	0	5	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0006	1434	9	7	2	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0007	1434	9	9	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0008	1434	6	5	1	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0009	1434	4	4	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0010	1434	2	0	0	0	0	2	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0012	1434	1	0	0	1	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0013	1434	1	0	0	0	0	1	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0015	1434	1	0	0	1	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0016	1434	1	0	0	1	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0017	1434	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0018	1434	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0019	1434	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0020	1434	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	c0021	1434	1	0	1	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OCA2_chr15_27749875_28104315	0/0	c0001	2517	10	5	1	2	0	2	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/1	c0002	2517	9	2	2	0	2	2	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	1/0	c0003	2517	9	5	2	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0004	2517	7	1	4	0	0	2	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	c0005	2517	7	7	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315