JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OPN1MW2_chrX_154214756_154238286	0/0	c0006	1095	6	1	4	0	0	1	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0007	1095	5	1	1	3	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0008	1095	4	0	3	0	0	1	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0009	1095	4	0	0	4	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0010	1095	3	3	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0011	1095	3	0	0	3	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0012	1095	3	0	2	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0013	1095	2	2	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0014	1095	2	0	0	1	1	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0015	1095	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0016	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0017	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0018	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0019	1095	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0020	1095	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0021	1095	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0022	1097	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0023	1095	1	0	0	0	0	1	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0024	1095	1	0	1	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0025	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0026	1096	1	0	1	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0027	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0028	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0029	1095	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0030	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0031	1095	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	c0032	1095	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW3_chrX_154252582_154276090	0/0	c0001	1095	2	2	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	c0002	1095	1	0	0	1	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	c0003	1101	1	1	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	c0004	1095	1	0	1	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	c0005	1094	1	1	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	c0006	1096	1	0	0	1	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW_chrX_154177596_154201861	0/0	c0001	1095	30	1	4	21	1	3	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0002	1095	8	0	1	7	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0003	1095	6	0	2	3	0	1	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0004	1095	5	4	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0005	1095	4	0	2	1	0	1	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0006	1095	3	0	0	2	0	1	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0007	1095	2	0	0	2	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0008	1095	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0009	1096	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0010	1095	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0011	1095	1	0	0	1	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	c0012	1096	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1SW_chr7_128767485_128780794	1/1	c0001	1038	326	84	62	139	12	27	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	c0002	1038	53	8	17	13	4	11	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	c0003	1038	3	0	3	0	0	0	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	c0004	1038	2	0	0	2	0	0	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	c0005	1038	2	0	2	0	0	0	copy fasta	OPN1SW	chr7	128767485	128780794