JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR4E1_chr14_21662886_21678818	0/0	c0007	948	5	5	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0008	948	5	0	3	0	1	1	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0009	948	4	4	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0010	948	3	2	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0011	948	3	3	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0012	950	2	0	0	2	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0013	947	2	0	1	0	1	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0014	950	1	0	0	0	1	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0015	948	1	1	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0016	948	1	0	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0017	950	1	0	0	1	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	c0018	948	1	0	0	0	0	1	copy fasta	OR4E1	chr14	21662886	21678818
OR4E2_chr14_21648835_21672642	0/1	c0001	942	155	3	17	111	4	19	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	1/0	c0002	942	151	29	33	70	8	10	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0003	942	101	37	17	32	2	13	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0004	942	45	22	14	3	4	2	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0005	942	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0006	942	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0007	942	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0008	942	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0009	942	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	c0010	942	1	0	1	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4F15_chr15_101807202_101825197	1/1	c0001	939	360	75	75	148	15	45	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	c0002	939	14	10	3	0	1	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	c0003	939	7	5	2	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	c0004	939	4	4	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	c0005	939	2	2	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	c0006	939	1	1	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	c0007	939	1	1	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	c0008	939	1	0	0	0	0	1	copy fasta	OR4F15	chr15	101807202	101825197
OR4F16_chr1_680716_691654	0/0	c0001	939	162	30	36	72	5	19	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	c0002	938	10	1	2	3	1	3	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	c0003	939	1	0	0	1	0	0	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	c0004	939	1	1	0	0	0	0	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	c0005	938	1	1	0	0	0	0	copy fasta	OR4F16	chr1	680716	691654
OR4F16_chr1_680716_691654	0/0	c0006	938	1	1	0	0	0	0	copy fasta	OR4F16	chr1	680716	691654
OR4F17_chr19_102104_118156	1/0	c0001	918	197	30	21	127	1	17	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0002	918	20	0	6	12	1	1	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0003	918	2	0	0	2	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0004	918	2	2	0	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0005	918	1	0	1	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0006	918	1	0	0	1	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0007	918	1	1	0	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0008	918	1	1	0	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0009	918	1	0	1	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	c0010	918	1	0	1	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F21_chr8_161086_172024	0/0	c0001	939	115	14	30	52	11	8	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0002	939	18	11	0	7	0	0	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0003	939	18	10	4	0	1	3	copy fasta	OR4F21	chr8	161086	172024
OR4F21_chr8_161086_172024	0/0	c0004	940	4	0	2	1	0	1	copy fasta	OR4F21	chr8	161086	172024