Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

geneid	81399
ensemblid	ENSG00000284662.2
hgncid	15079
symbol	OR4F16
name	olfactory receptor family 4 subfamily F member 16
refseq_nuc	NM_001005277.1
refseq_prot	NP_001005277.1
ensembl_nuc	ENST00000332831.5
ensembl_prot	ENSP00000329982.2
mane_status	MANE Select
chr	chr1
start	685716
end	686654
strand	-
ver	v1.2
region	chr1:685716-686654
region5000	chr1:680716-691654
regionname0	OR4F16_chr1_685716_686654
regionname5000	OR4F16_chr1_680716_691654

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	312	163	30	36	73	5	19	53	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0002	0/0	132	10	1	2	3	1	3	1	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0003	0/0	132	1	1	0	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0004	0/0	132	1	1	0	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0005	0/0	312	1	1	0	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	939	162	30	36	72	5	19	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
c0002	0/0	938	10	1	2	3	1	3	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
c0003	0/0	939	1	0	0	1	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
c0004	0/0	939	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
c0005	0/0	938	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
c0006	0/0	938	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	176	34	38	76	6	22	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	939	162	30	36	72	5	19	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0001c0003	0/0	939	1	0	0	1	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0002c0002	0/0	938	10	1	2	3	1	3	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0003c0005	0/0	938	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0004c0006	0/0	938	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0005c0004	0/0	939	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0000	0/0	939	162	30	36	72	5	19	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0001c0003t0000	0/0	939	1	0	0	1	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0002c0002t0000	0/0	938	10	1	2	3	1	3	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0003c0005t0000	0/0	938	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0004c0006t0000	0/0	938	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654
a0005c0004t0000	0/0	939	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	copy fasta	chr1	680716	691654

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0000g0000	0/0	162	30	36	72	5	19	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
a0001c0003t0000g0000	0/0	1	0	0	1	0	0	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
a0002c0002t0000g0000	0/0	10	1	2	3	1	3	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
a0003c0005t0000g0000	0/0	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
a0004c0006t0000g0000	0/0	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
a0005c0004t0000g0000	0/0	1	1	0	0	0	0	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00280	hp1	a0001	c0001	t0000	g0000	EUR	FIN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00280	hp2	a0001	c0001	t0000	g0000	EUR	FIN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00408	hp1	a0001	c0001	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00408	hp2	a0002	c0002	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00609	hp1	a0001	c0001	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00609	hp2	a0001	c0001	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00621	hp1	a0001	c0001	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00621	hp2	a0001	c0001	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00673	hp1	a0001	c0001	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00673	hp2	a0001	c0001	t0000	g0000	EAS	CHS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00733	hp1	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00733	hp2	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00735	hp1	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00735	hp2	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00738	hp1	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG00738	hp2	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01070	hp1	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01070	hp2	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01071	hp1	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01071	hp2	a0002	c0002	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01081	hp1	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01081	hp2	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01167	hp1	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01167	hp2	a0001	c0001	t0000	g0000	AMR	PUR	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01256	hp1	a0001	c0001	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01256	hp2	a0001	c0001	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01258	hp1	a0001	c0001	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01258	hp2	a0001	c0001	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01261	hp1	a0001	c0001	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01261	hp2	a0001	c0001	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01517	hp1	a0001	c0001	t0000	g0000	EUR	IBS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01517	hp2	a0001	c0001	t0000	g0000	EUR	IBS	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01928	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01928	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01934	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01934	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01943	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01943	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01978	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01978	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01993	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01993	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02027	hp1	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02027	hp2	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02040	hp1	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02040	hp2	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02055	hp1	a0001	c0001	t0000	g0000	AFR	ACB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02055	hp2	a0001	c0001	t0000	g0000	AFR	ACB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02056	hp1	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02056	hp2	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02071	hp1	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02071	hp2	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02129	hp1	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02129	hp2	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02148	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02148	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02165	hp1	a0001	c0001	t0000	g0000	EAS	CDX	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02165	hp2	a0002	c0002	t0000	g0000	EAS	CDX	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02273	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02273	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02293	hp1	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02293	hp2	a0001	c0001	t0000	g0000	AMR	PEL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02523	hp1	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02523	hp2	a0001	c0001	t0000	g0000	EAS	KHV	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02723	hp1	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02723	hp2	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02735	hp1	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02735	hp2	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02738	hp1	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02738	hp2	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02809	hp1	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02809	hp2	a0005	c0004	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02886	hp1	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02886	hp2	a0002	c0002	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02896	hp1	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02896	hp2	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02965	hp1	a0001	c0001	t0000	g0000	AFR	ESN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02965	hp2	a0001	c0001	t0000	g0000	AFR	ESN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02970	hp1	a0001	c0001	t0000	g0000	AFR	ESN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02970	hp2	a0001	c0001	t0000	g0000	AFR	ESN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03017	hp1	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03017	hp2	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03041	hp1	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03041	hp2	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03195	hp1	a0001	c0001	t0000	g0000	AFR	ESN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03195	hp2	a0004	c0006	t0000	g0000	AFR	ESN	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03239	hp1	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03239	hp2	a0002	c0002	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03453	hp1	a0001	c0001	t0000	g0000	AFR	MSL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03453	hp2	a0001	c0001	t0000	g0000	AFR	MSL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03490	hp1	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03490	hp2	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03540	hp1	a0001	c0001	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03540	hp2	a0003	c0005	t0000	g0000	AFR	GWD	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03579	hp1	a0001	c0001	t0000	g0000	AFR	MSL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03579	hp2	a0001	c0001	t0000	g0000	AFR	MSL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03669	hp1	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03669	hp2	a0001	c0001	t0000	g0000	SAS	PJL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03831	hp1	a0001	c0001	t0000	g0000	SAS	BEB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03831	hp2	a0002	c0002	t0000	g0000	SAS	BEB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03834	hp1	a0001	c0001	t0000	g0000	SAS	BEB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03834	hp2	a0001	c0001	t0000	g0000	SAS	BEB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03927	hp1	a0001	c0001	t0000	g0000	SAS	BEB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03927	hp2	a0001	c0001	t0000	g0000	SAS	BEB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG04115	hp1	a0001	c0001	t0000	g0000	SAS	STU	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG04115	hp2	a0001	c0001	t0000	g0000	SAS	STU	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG04204	hp1	a0002	c0002	t0000	g0000	SAS	STU	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG04204	hp2	a0001	c0001	t0000	g0000	SAS	STU	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18950	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18950	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18954	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18954	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18956	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18956	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18963	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18963	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18968	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18968	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18969	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18969	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18971	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18971	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18973	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18973	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18974	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18974	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18975	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18975	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18977	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18977	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18979	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18979	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18980	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18980	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18982	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18982	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18988	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18988	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18989	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18989	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18991	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18991	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18998	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA18998	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19009	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19009	hp2	a0002	c0002	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19010	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19010	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19055	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19055	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19059	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19059	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19060	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19060	hp2	a0001	c0003	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19065	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19065	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19076	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19076	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19081	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19081	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19085	hp1	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA19085	hp2	a0001	c0001	t0000	g0000	EAS	JPT	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA20129	hp1	a0001	c0001	t0000	g0000	AFR	ASW	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA20129	hp2	a0001	c0001	t0000	g0000	AFR	ASW	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA20752	hp1	a0001	c0001	t0000	g0000	EUR	TSI	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
NA20752	hp2	a0002	c0002	t0000	g0000	EUR	TSI	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01123	hp1	a0001	c0001	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG01123	hp2	a0002	c0002	t0000	g0000	AMR	CLM	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02109	hp1	a0001	c0001	t0000	g0000	AFR	ACB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02109	hp2	a0001	c0001	t0000	g0000	AFR	ACB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02486	hp1	a0001	c0001	t0000	g0000	AFR	ACB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG02486	hp2	a0001	c0001	t0000	g0000	AFR	ACB	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03471	hp1	a0001	c0001	t0000	g0000	AFR	MSL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG03471	hp2	a0001	c0001	t0000	g0000	AFR	MSL	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG06807	hp1	a0001	c0001	t0000	g0000	AFR	USA	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654
HG06807	hp2	a0001	c0001	t0000	g0000	AFR	USA	OR4F16_chr1_680716_691654	OR4F16	chr1	680716	691654

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr1:685726	C C	T T	3	a0002 a0003 a0004 a0002 a0003 a0004	12	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(9): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03195.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.929G>A c.929G>A	p.Arg310Lys p.Arg310Lys	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	929/939	929/939	310/312	chr1	685726
chr1:685877	G G	A A	3	a0002 a0003 a0004 a0002 a0003 a0004	12	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(9): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03195.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.778C>T c.778C>T	p.Arg260Trp p.Arg260Trp	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	778/939	778/939	260/312	chr1	685877
chr1:685918	A A	G G	3	a0002 a0003 a0004 a0002 a0003 a0004	12	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(9): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03195.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.737T>C c.737T>C	p.Val246Ala p.Val246Ala	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	737/939	737/939	246/312	chr1	685918
chr1:686000	C C	T T	3	a0002 a0003 a0004 a0002 a0003 a0004	12	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(9): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03195.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.655G>A c.655G>A	p.Val219Ile p.Val219Ile	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	655/939	655/939	219/312	chr1	686000
chr1:686059	A A	G G	1	a0002 a0002	10	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(7): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03239.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.596T>C c.596T>C	p.Val199Ala p.Val199Ala	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	596/939	596/939	199/312	chr1	686059
chr1:686107	C C	T T	1	a0002 a0002	10	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(7): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03239.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.548G>A c.548G>A	p.Arg183Gln p.Arg183Gln	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	548/939	548/939	183/312	chr1	686107
chr1:686108	G G	A A	1	a0005 a0005	1	HG02809.hp2 HG02809.hp2	missense_variant	MODERATE	c.547C>T c.547C>T	p.Arg183Trp p.Arg183Trp	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	547/939	547/939	183/312	chr1	686108
chr1:686156	C C	G G	3	a0002 a0003 a0004 a0002 a0003 a0004	12	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(9): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03195.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.499G>C c.499G>C	p.Ala167Pro p.Ala167Pro	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	499/939	499/939	167/312	chr1	686156
chr1:686266	A A	C C	2	a0003 a0004 a0003 a0004	2	HG03195.hp2 HG03540.hp2 HG03195.hp2 HG03540.hp2	missense_variant	MODERATE	c.389T>G c.389T>G	p.Leu130Arg p.Leu130Arg	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	389/939	389/939	130/312	chr1	686266
chr1:686274	AC AC	A A	3	a0002 a0003 a0004 a0002 a0003 a0004	12	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(9): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03195.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	frameshift_variant	HIGH	c.380delG c.380delG	p.Cys127fs p.Cys127fs	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	380/939	380/939	127/312	chr1	686274
chr1:686289	T T	A A	3	a0002 a0003 a0004 a0002 a0003 a0004	12	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(9): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03195.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.366A>T c.366A>T	p.Arg122Ser p.Arg122Ser	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	366/939	366/939	122/312	chr1	686289
chr1:686336	C C	T T	2	a0002 a0003 a0002 a0003	11	HG00408.hp2 HG01071.hp2 HG01123.hp2 others(8): Show HG00408.hp2 HG01071.hp2 HG01123.hp2 HG02165.hp2 HG02886.hp2 HG03239.hp2 HG03540.hp2 HG03831.hp2 HG04204.hp1 NA19009.hp2 NA20752.hp2	missense_variant	MODERATE	c.319G>A c.319G>A	p.Val107Ile p.Val107Ile	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	319/939	319/939	107/312	chr1	686336
chr1:686390	G G	A A	2	a0003 a0004 a0003 a0004	2	HG03195.hp2 HG03540.hp2 HG03195.hp2 HG03540.hp2	missense_variant	MODERATE	c.265C>T c.265C>T	p.Arg89Cys p.Arg89Cys	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	265/939	265/939	89/312	chr1	686390

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr1:685803	T T	C C	1	a0001c0003 a0001c0003	1	NA19060.hp2 NA19060.hp2	synonymous_variant	LOW	c.852A>G c.852A>G	p.Pro284Pro p.Pro284Pro	OR4F16	ENSG00000284662.2	transcript	ENST00000332831.5	protein_coding	1/1	852/939	852/939	284/312			chr1	685803

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

Search by Genic region

Search

🧬 JoGo Online Haplotype Explorer OR4F16_chr1_680716_691654

JoGo Local Haplotype Explorer (on iGV) OR4F16_chr1_680716_691654

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 5)

CCoding Level Haplotype Info (Total: 6)

TTranscript Level Haplotype Info (Total: 0)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 6)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 6)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 6)

Haplotype Details by Sample (Haploid Level) (Total: 176)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 13)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

External Link

Annotation (Repeats)

Annotation (SNP Array)