JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OR6V1_chr7_143047341_143058282	0/1	c0001	942	260	25	60	129	12	33	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0002	942	24	11	4	8	0	1	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0003	942	21	19	2	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0004	942	16	2	6	0	1	7	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0005	942	11	11	0	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0006	942	10	10	0	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0007	942	10	8	1	0	1	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0008	942	7	6	1	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0009	942	2	0	0	2	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0010	942	1	0	0	1	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0011	942	1	0	0	0	0	1	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0012	942	1	0	0	1	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0013	942	1	1	0	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0014	942	1	1	0	0	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6V1_chr7_143047341_143058282	0/0	c0015	942	1	0	0	1	0	0	copy fasta	OR6V1	chr7	143047341	143058282
OR6X1_chr11_123748580_123759518	1/1	c0001	939	396	82	67	195	10	40	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	c0002	939	29	3	12	6	4	4	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	c0003	939	3	3	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	c0004	939	3	3	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	c0005	939	3	0	0	3	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	c0006	939	2	1	1	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	c0007	939	1	1	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6X1_chr11_123748580_123759518	0/0	c0008	939	1	1	0	0	0	0	copy fasta	OR6X1	chr11	123748580	123759518
OR6Y1_chr1_158539550_158559405	0/0	c0000	0	6	6	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	1/1	c0001	978	278	46	54	132	12	32	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0002	978	102	5	20	65	4	8	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0003	978	9	9	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0004	978	8	8	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0005	978	5	5	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0006	978	5	5	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0007	978	4	4	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0008	978	3	3	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0009	978	3	3	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0010	978	2	2	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0011	978	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0012	978	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0013	978	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0014	978	1	0	0	1	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR6Y1_chr1_158539550_158559405	0/0	c0015	978	1	1	0	0	0	0	copy fasta	OR6Y1	chr1	158539550	158559405
OR7A10_chr19_14835466_14853922	1/0	c0001	930	223	34	44	111	9	24	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0002	930	92	16	14	48	2	12	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/1	c0003	930	80	0	16	59	0	4	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0004	930	47	13	6	17	3	8	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0005	930	21	15	2	4	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0006	930	11	11	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0007	930	6	6	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0008	930	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0009	930	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0010	930	1	1	0	0	0	0	copy fasta	OR7A10	chr19	14835466	14853922
OR7A10_chr19_14835466_14853922	0/0	c0011	930	1	0	0	1	0	0	copy fasta	OR7A10	chr19	14835466	14853922