JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OSMR_chr5_38841012_38940641	0/0	c0018	2940	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0019	2940	1	1	0	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0020	2940	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0021	2940	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0022	2940	1	0	1	0	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0023	2940	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0024	2940	1	0	0	1	0	0	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0025	2940	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSMR_chr5_38841012_38940641	0/0	c0026	2940	1	0	0	0	0	1	copy fasta	OSMR	chr5	38841012	38940641
OSM_chr22_30257829_30271851	1/1	c0001	759	412	91	77	181	18	43	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0002	759	11	0	0	11	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0003	759	3	0	0	2	0	1	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0004	759	3	0	0	3	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0005	759	1	0	0	1	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0006	759	1	1	0	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0007	759	1	0	1	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0008	759	1	1	0	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSM_chr22_30257829_30271851	0/0	c0009	759	1	1	0	0	0	0	copy fasta	OSM	chr22	30257829	30271851
OSR1_chr2_19346485_19363623	1/1	c0001	801	390	71	74	182	16	45	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	c0002	801	27	24	2	0	0	1	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	c0003	801	1	1	0	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	c0004	801	1	1	0	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	c0005	801	1	1	0	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	c0006	801	1	1	0	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	c0007	801	1	1	0	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR2_chr8_98939442_98957100	1/1	c0001	939	298	66	50	138	18	24	copy fasta	OSR2	chr8	98939442	98957100
OST4_chr2_27065472_27076654	1/1	c0001	114	337	91	68	124	18	34	copy fasta	OST4	chr2	27065472	27076654
OST4_chr2_27065472_27076654	0/0	c0002	114	1	1	0	0	0	0	copy fasta	OST4	chr2	27065472	27076654
OSTC_chr4_108645599_108672820	1/1	c0001	450	369	93	70	152	16	36	copy fasta	OSTC	chr4	108645599	108672820
OSTC_chr4_108645599_108672820	0/0	c0002	450	3	3	0	0	0	0	copy fasta	OSTC	chr4	108645599	108672820
OSTF1_chr9_75083514_75152265	1/0	c0001	645	282	79	51	114	10	27	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/1	c0002	645	44	1	12	19	3	8	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	c0003	645	39	0	11	18	1	9	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	c0004	645	1	0	0	1	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTM1_chr6_108036409_108079741	1/1	c0001	1005	338	60	56	175	13	32	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0002	1005	19	19	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0003	1005	11	11	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0004	1006	10	0	4	5	1	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0005	1005	4	4	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0006	1005	2	0	0	1	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0007	1005	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0008	1005	1	0	0	0	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0009	1005	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	c0010	1005	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTN_chr3_191194241_191270615	1/1	c0001	402	397	85	77	171	16	46	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	c0002	402	1	0	0	1	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	c0003	389	1	0	1	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	c0004	402	1	1	0	0	0	0	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	c0005	402	1	0	0	0	0	1	copy fasta	OSTN	chr3	191194241	191270615
OSTN_chr3_191194241_191270615	0/0	c0006	402	1	0	0	0	0	1	copy fasta	OSTN	chr3	191194241	191270615