JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
OTUD1_chr10_23434075_23447377	0/0	c0007	1446	3	2	1	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0008	1446	3	0	3	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0009	1446	1	0	0	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0010	1446	1	0	0	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0011	1446	1	0	0	1	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0012	1446	1	0	1	0	0	0	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0013	1446	1	0	0	0	0	1	copy fasta	OTUD1	chr10	23434075	23447377
OTUD1_chr10_23434075_23447377	0/0	c0014	1446	1	0	0	0	0	1	copy fasta	OTUD1	chr10	23434075	23447377
OTUD3_chr1_19877395_19917945	1/1	c0001	1197	326	83	55	147	13	26	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0002	1197	19	0	10	6	1	2	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0003	1197	14	6	3	0	2	3	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0004	1197	8	0	6	0	0	2	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0005	1197	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0006	1197	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0007	1197	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0008	1197	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0009	1197	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0010	1197	1	0	0	1	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	c0011	1197	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD4_chr4_145128650_145185589	1/1	c0001	3345	326	72	60	142	10	40	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0002	3345	4	0	0	4	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0003	3345	4	4	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0004	3345	3	0	2	0	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0005	3345	2	2	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0006	3345	2	1	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0007	3345	1	0	0	0	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0008	3345	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0009	3345	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0010	3345	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	c0011	3345	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD5_chrX_48917024_48962607	1/1	c0001	1701	246	60	43	102	9	30	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0002	1701	13	9	4	0	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0003	1705	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0004	1702	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0005	1700	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0006	1701	1	1	0	0	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0007	1700	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0008	1702	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	c0009	1700	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD6A_chrX_70057457_70069179	1/1	c0001	867	311	62	59	146	11	31	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0002	867	8	7	1	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0003	867	5	5	0	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0004	868	2	0	0	2	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0005	864	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0006	867	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0007	867	1	0	1	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0008	868	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0009	867	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0010	867	1	1	0	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	c0011	867	1	0	0	0	0	1	copy fasta	OTUD6A	chrX	70057457	70069179