JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PADI6_chr1_17367196_17406699	0/0	c0019	2085	1	0	1	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0020	2085	1	0	0	1	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0021	2085	1	0	0	0	0	1	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0022	2085	1	0	0	0	1	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0023	2085	1	1	0	0	0	0	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0024	2085	1	0	0	0	0	1	copy fasta	PADI6	chr1	17367196	17406699
PADI6_chr1_17367196_17406699	0/0	c0025	2085	1	0	0	0	0	1	copy fasta	PADI6	chr1	17367196	17406699
PAEP_chr9_135556756_135571955	1/1	c0001	543	294	62	68	112	13	37	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	c0002	543	162	33	16	99	3	11	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	c0003	543	3	3	0	0	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	c0004	543	2	2	0	0	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	c0005	528	1	0	0	1	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	c0006	543	1	0	0	1	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAEP_chr9_135556756_135571955	0/0	c0007	543	1	0	0	1	0	0	copy fasta	PAEP	chr9	135556756	135571955
PAF1_chr19_39380629_39396106	1/0	c0001	1596	326	78	70	119	16	42	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0002	1596	28	9	4	14	0	1	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0003	1596	7	0	0	7	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0004	1596	1	0	0	0	0	1	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/1	c0005	1596	1	0	0	0	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0006	1596	1	1	0	0	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0007	1596	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0008	1556	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0009	1596	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAF1_chr19_39380629_39396106	0/0	c0010	1596	1	0	0	1	0	0	copy fasta	PAF1	chr19	39380629	39396106
PAFAH1B1_chr17_2588654_2690615	1/1	c0001	1233	266	69	62	88	11	34	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	c0002	1233	7	7	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	c0003	1233	5	5	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	c0004	1233	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	c0005	1233	1	0	0	0	1	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B2_chr11_117139287_117176045	1/1	c0001	690	432	90	78	200	16	46	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B3_chr19_42292035_42307624	1/1	c0001	696	318	88	72	110	10	36	copy fasta	PAFAH1B3	chr19	42292035	42307624
PAFAH2_chr1_25954767_26003063	0/0	c0001	1179	297	93	60	103	13	28	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	c0002	1179	5	5	0	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	c0003	1179	2	2	0	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	c0004	1179	2	0	0	0	2	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	c0005	1179	2	0	0	2	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	c0006	1179	1	0	0	0	1	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	c0007	1179	1	0	0	1	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAG1_chr8_80962810_81117068	1/1	c0001	1299	109	17	24	42	3	21	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	c0002	1299	89	29	6	42	3	9	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	c0003	1299	35	24	5	0	0	6	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	c0004	1299	19	19	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	c0005	1299	2	2	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	c0006	1299	1	1	0	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAG1_chr8_80962810_81117068	0/0	c0007	1299	1	0	1	0	0	0	copy fasta	PAG1	chr8	80962810	81117068
PAGE1_chrX_49682447_49700984	1/1	c0001	441	306	66	43	156	9	30	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	c0002	441	5	5	0	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	c0003	441	5	0	1	3	0	1	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	c0004	441	2	2	0	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984
PAGE1_chrX_49682447_49700984	0/0	c0005	441	1	0	1	0	0	0	copy fasta	PAGE1	chrX	49682447	49700984