JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCNX3_chr11_65610776_65642439	0/0	c0030	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0031	6105	1	0	0	0	1	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0032	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0033	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0034	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0035	6105	1	0	1	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0036	6083	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0037	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0038	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0039	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0040	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0041	6093	1	0	0	0	0	1	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0042	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0043	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0044	6105	1	0	1	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0045	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0046	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0047	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0048	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0049	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0050	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0051	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0052	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX4_chr14_60086923_60153221	0/1	c0001	3519	131	27	25	57	7	14	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0002	3519	50	20	11	9	0	10	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0003	3519	40	2	0	37	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0004	3519	24	0	0	24	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0005	3519	8	0	1	7	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0006	3519	8	0	2	3	1	2	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0007	3519	7	6	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0008	3522	7	4	1	0	0	2	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0009	3519	6	6	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0010	3519	4	0	0	4	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0011	3519	2	2	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0012	3519	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0013	3519	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0014	3519	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	1/0	c0015	3519	1	0	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0016	3519	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0017	3519	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0018	3519	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0019	3519	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0020	3519	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0021	3519	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0022	3519	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0023	3519	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0024	3519	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0025	3519	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0026	3519	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0027	3519	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221