JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCNX4_chr14_60086923_60153221	0/0	c0028	3519	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0029	3519	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0030	3519	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0031	3519	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	c0032	3519	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCOLCE2_chr3_142812874_142894083	1/1	c0001	1248	306	79	55	121	12	37	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	c0002	1248	18	3	4	10	1	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	c0003	1248	10	0	6	0	3	1	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	c0004	1248	4	4	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	c0005	1248	1	1	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	c0006	1248	1	1	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	c0007	1248	1	0	1	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	c0008	1248	1	0	0	1	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE_chr7_100597363_100613175	1/1	c0001	1350	313	79	52	120	16	44	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0002	1350	4	4	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0003	1350	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0004	1350	1	0	0	1	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0005	1350	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0006	1350	1	0	0	0	0	1	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0007	1350	1	0	0	1	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0008	1350	1	0	1	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0009	1350	1	0	0	0	0	1	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0010	1350	1	0	0	1	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0011	1350	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0012	1350	1	0	1	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0013	1350	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0014	1350	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0015	1350	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0016	1350	1	0	0	1	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	c0017	1350	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCP2_chr19_7626615_7638719	1/1	c0001	411	294	69	58	123	12	30	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	c0002	411	95	17	15	49	4	10	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	c0003	411	9	0	9	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	c0004	411	8	8	0	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	c0005	411	4	4	0	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	c0006	411	1	0	0	1	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	c0007	411	1	0	0	1	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP4L1_chr1_161253745_161290450	1/1	c0001	207	386	79	67	182	14	42	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	c0002	207	14	13	1	0	0	0	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	c0003	207	2	0	0	0	0	2	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4_chr21_39862438_39934392	1/1	c0001	189	428	96	66	204	14	46	copy fasta	PCP4	chr21	39862438	39934392
PCSK1N_chrX_48826096_48840610	1/0	c0001	783	129	23	21	68	3	13	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/1	c0002	783	86	2	30	36	8	9	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0003	783	85	51	7	22	1	4	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0004	783	2	0	2	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0005	784	1	1	0	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0006	785	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0007	785	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0008	784	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0009	784	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610