JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDE4DIP_chr1_148839428_149038016	0/0	c0002	7239	2	0	1	1	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0003	7239	2	0	2	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0004	7239	2	1	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	1/0	c0005	7239	2	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0006	7239	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0007	7239	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0008	7239	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0009	7239	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0010	7239	1	0	0	0	0	1	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0011	7239	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0012	7239	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0013	7239	1	0	0	1	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/1	c0014	7239	1	0	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0015	7239	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0016	7239	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0017	7239	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	c0018	7239	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4D_chr5_58964038_59898726	0/0	c0001	2430	70	38	12	6	6	8	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	c0002	2430	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	c0003	2430	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	c0004	2430	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	c0005	2430	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE5A_chr4_119489403_119633804	0/0	c0001	2628	144	31	32	65	5	11	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0002	2628	108	22	24	54	2	6	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	1/1	c0003	2628	51	16	6	15	6	6	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0004	2628	8	1	2	3	1	1	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0005	2628	6	6	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0006	2628	4	3	1	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0007	2628	4	4	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0008	2628	2	2	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0009	2628	2	1	1	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0010	2628	2	2	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0011	2628	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0012	2628	1	0	0	1	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0013	2628	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0014	2628	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	c0015	2628	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE6A_chr5_149852953_149949793	1/1	c0001	2583	173	22	41	72	12	24	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0002	2583	79	17	10	40	1	11	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0003	2583	8	8	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0004	2583	7	6	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0005	2583	7	4	0	1	0	2	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0006	2583	5	1	4	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0007	2583	5	5	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0008	2583	5	5	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0009	2583	4	3	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0010	2583	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0011	2583	3	2	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0012	2583	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	c0013	2583	2	0	0	2	0	0	copy fasta	PDE6A	chr5	149852953	149949793