JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PDILT_chr16_20354175_20409737	0/0	c0021	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0022	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0023	1755	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0024	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0025	1755	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0026	1755	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0027	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0028	1755	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0029	1755	1	1	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0030	1755	1	0	0	1	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0031	1755	1	0	0	0	0	1	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	c0032	1755	1	0	0	0	0	1	copy fasta	PDILT	chr16	20354175	20409737
PDK1_chr2_172551090_172613669	1/1	c0001	1311	303	72	62	128	7	32	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	c0002	1311	27	4	8	9	1	5	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	c0003	1311	4	4	0	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	c0004	1311	4	1	2	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	c0005	1311	1	0	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	c0006	1311	1	0	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	c0007	1311	1	1	0	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	c0008	1311	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK2_chr17_50090351_50117152	1/0	c0001	1224	217	46	38	104	9	19	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/1	c0002	1224	168	38	36	63	3	27	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	c0003	1224	4	4	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	c0004	1224	3	0	0	3	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	c0005	1224	2	2	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	c0006	1224	1	0	0	1	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	c0007	1224	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	c0008	1224	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	c0009	1224	1	0	0	1	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK3_chrX_24460286_24539422	1/1	c0001	1221	256	60	42	117	7	28	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	c0002	1221	1	0	0	1	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	c0003	1222	1	0	0	1	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK4_chr7_95578499_95601516	0/0	c0001	1236	210	56	28	97	12	17	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	1/1	c0002	1236	121	39	37	26	4	13	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0003	1236	41	1	3	22	0	15	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0004	1236	3	0	3	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0005	1236	2	0	0	2	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0006	1236	2	1	0	0	0	1	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0007	1236	2	0	0	2	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0008	1236	1	0	0	1	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0009	1236	1	0	1	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	c0010	1236	1	1	0	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDLIM1_chr10_95232572_95296003	1/1	c0001	990	213	51	28	97	8	27	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	c0002	990	62	15	16	18	4	9	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	c0003	990	59	12	20	10	6	11	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	c0004	990	1	1	0	0	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	c0005	990	1	0	0	0	0	1	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	c0006	990	1	0	0	1	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM1_chr10_95232572_95296003	0/0	c0007	990	1	1	0	0	0	0	copy fasta	PDLIM1	chr10	95232572	95296003
PDLIM2_chr8_22575475_22599298	0/0	c0001	1059	176	48	33	58	10	27	copy fasta	PDLIM2	chr8	22575475	22599298