JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHF2_chr9_93571584_93684587	0/0	c0006	3291	6	0	0	6	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0007	3306	4	4	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0008	3306	4	3	1	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0009	3291	3	0	1	0	0	2	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0010	3306	3	3	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0011	3291	2	2	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0012	3306	2	0	1	0	0	1	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0013	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0014	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0015	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0016	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0017	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0018	3291	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0019	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0020	3306	1	0	1	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0021	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0022	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0023	3306	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0024	3291	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0025	3306	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	c0026	3306	1	0	0	0	0	1	copy fasta	PHF2	chr9	93571584	93684587
PHF3_chr6_63630802_63731011	1/0	c0001	6120	286	60	59	120	13	33	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0002	6120	8	8	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0003	6120	3	0	0	3	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0004	6120	3	3	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0005	6120	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0006	6120	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0007	6120	1	0	0	0	0	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0008	6120	1	0	0	0	1	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0009	6120	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0010	6120	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/1	c0011	6120	1	0	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0012	6120	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0013	6120	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0014	6120	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0015	6120	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0016	6120	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0017	6120	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0018	6120	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0019	6120	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0020	6120	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0021	6120	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	c0022	6120	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF5A_chr22_41454717_41473692	1/1	c0001	333	408	96	72	186	12	40	copy fasta	PHF5A	chr22	41454717	41473692
PHF6_chrX_134368312_134433790	1/1	c0001	1098	283	58	51	135	9	28	copy fasta	PHF6	chrX	134368312	134433790
PHF7_chr3_52405660_52428641	0/1	c0001	1146	329	77	69	141	11	30	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	1/0	c0002	1146	9	0	4	3	1	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0003	1146	6	0	0	5	0	1	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0004	1146	5	4	1	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0005	1146	3	0	3	0	0	0	copy fasta	PHF7	chr3	52405660	52428641