JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PHF7_chr3_52405660_52428641	0/0	c0006	1146	3	0	0	3	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0007	1146	2	2	0	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0008	1146	2	1	1	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0009	1146	1	1	0	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0010	1146	1	1	0	0	0	0	copy fasta	PHF7	chr3	52405660	52428641
PHF7_chr3_52405660_52428641	0/0	c0011	1146	1	0	0	0	0	1	copy fasta	PHF7	chr3	52405660	52428641
PHF8_chrX_53931680_54049473	1/1	c0001	3075	177	58	33	61	5	18	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	c0002	3072	3	3	0	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	c0003	3076	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	c0004	3074	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	c0005	3074	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	c0006	3072	1	1	0	0	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	c0007	3075	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHF8_chrX_53931680_54049473	0/0	c0008	3077	1	0	0	1	0	0	copy fasta	PHF8	chrX	53931680	54049473
PHGDH_chr1_119706934_119749215	0/1	c0001	1602	253	60	44	101	9	38	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	1/0	c0002	1602	138	28	28	67	5	9	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	c0003	1602	5	5	0	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	c0004	1602	1	0	0	0	0	1	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	c0005	1602	1	1	0	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	c0006	1602	1	0	1	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGDH_chr1_119706934_119749215	0/0	c0007	1602	1	0	1	0	0	0	copy fasta	PHGDH	chr1	119706934	119749215
PHGR1_chr15_40346033_40361434	1/1	c0001	249	299	54	62	138	15	28	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	c0002	282	79	38	5	24	0	12	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	c0003	249	33	0	5	21	3	4	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	c0004	249	16	0	0	16	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	c0005	282	6	0	0	6	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	c0006	249	1	0	0	1	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	c0007	249	1	0	0	1	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHGR1_chr15_40346033_40361434	0/0	c0008	249	1	0	0	1	0	0	copy fasta	PHGR1	chr15	40346033	40361434
PHIP_chr6_78929419_79083254	0/1	c0001	5466	123	30	21	52	2	17	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0002	5466	79	14	11	38	6	10	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0003	5466	33	2	5	19	4	3	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	1/0	c0004	5466	18	5	9	0	0	3	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0005	5466	17	16	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0006	5466	17	9	1	7	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0007	5466	7	7	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0008	5466	4	4	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0009	5466	4	0	4	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0010	5466	3	2	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0011	5466	3	0	0	3	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0012	5466	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0013	5466	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0014	5466	1	0	1	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0015	5466	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0016	5466	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0017	5466	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0018	5466	1	0	0	0	0	1	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0019	5466	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0020	5466	1	0	0	1	0	0	copy fasta	PHIP	chr6	78929419	79083254
PHIP_chr6_78929419_79083254	0/0	c0021	5466	1	1	0	0	0	0	copy fasta	PHIP	chr6	78929419	79083254