JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PITRM1_chr10_3132728_3177782	0/0	c0037	3114	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0038	3114	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0039	3114	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0040	3114	1	0	0	0	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0041	3114	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0042	3114	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0043	3114	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0044	3139	1	0	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0045	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0046	3139	1	0	0	0	1	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0047	3139	1	0	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0048	3139	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0049	3139	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0050	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0051	3139	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0052	3139	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0053	3139	1	0	0	0	1	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0054	3139	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0055	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0056	3139	1	0	0	1	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0057	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0058	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0059	3114	1	0	0	0	0	1	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0060	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0061	3114	1	0	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0062	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0063	3139	1	0	1	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0064	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0065	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0066	3139	1	1	0	0	0	0	copy fasta	PITRM1	chr10	3132728	3177782
PITRM1_chr10_3132728_3177782	0/0	c0067	3139	1	0	0	0	1	0	copy fasta	PITRM1	chr10	3132728	3177782
PITX1_chr5_135022734_135039228	1/1	c0001	945	199	34	44	87	8	24	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	c0002	945	135	14	21	84	5	11	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	c0003	945	63	40	19	0	1	3	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	c0004	945	6	6	0	0	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX1_chr5_135022734_135039228	0/0	c0005	945	1	0	0	1	0	0	copy fasta	PITX1	chr5	135022734	135039228
PITX2_chr4_110612423_110628077	1/1	c0001	975	415	91	69	198	18	37	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	c0002	975	3	3	0	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	c0003	975	3	0	3	0	0	0	copy fasta	PITX2	chr4	110612423	110628077
PITX2_chr4_110612423_110628077	0/0	c0004	975	1	0	0	0	0	1	copy fasta	PITX2	chr4	110612423	110628077
PITX3_chr10_102225189_102246512	0/0	c0001	909	294	77	52	135	10	20	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	1/1	c0002	909	112	18	24	52	4	12	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	c0003	909	2	0	0	2	0	0	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	c0004	909	1	0	0	1	0	0	copy fasta	PITX3	chr10	102225189	102246512
PITX3_chr10_102225189_102246512	0/0	c0005	909	1	1	0	0	0	0	copy fasta	PITX3	chr10	102225189	102246512
PIWIL1_chr12_130332887_130377637	0/1	c0001	2586	287	58	59	140	8	21	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0002	2586	69	20	10	27	2	10	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0003	2586	41	3	1	25	2	10	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0004	2586	9	9	0	0	0	0	copy fasta	PIWIL1	chr12	130332887	130377637
PIWIL1_chr12_130332887_130377637	0/0	c0005	2586	3	0	0	0	0	3	copy fasta	PIWIL1	chr12	130332887	130377637