JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA2G4F_chr15_42134034_42161636	0/0	c0054	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0055	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0056	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0057	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0058	2550	1	0	1	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0059	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0060	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0061	2550	1	0	1	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0062	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0063	2550	1	1	0	0	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0064	2550	1	0	0	0	0	1	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0065	2550	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G4F_chr15_42134034_42161636	0/0	c0066	2550	1	0	0	1	0	0	copy fasta	PLA2G4F	chr15	42134034	42161636
PLA2G5_chr1_20065194_20096911	1/0	c0001	417	306	76	63	126	10	30	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/1	c0002	417	113	9	15	66	6	16	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	c0003	417	10	10	0	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G5_chr1_20065194_20096911	0/0	c0004	417	1	1	0	0	0	0	copy fasta	PLA2G5	chr1	20065194	20096911
PLA2G6_chr22_38106495_38186830	1/1	c0001	2421	10	2	4	0	0	2	copy fasta	PLA2G6	chr22	38106495	38186830
PLA2G7_chr6_46699201_46740375	0/0	c0001	1326	137	31	29	59	4	14	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0002	1326	129	20	28	52	3	26	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	1/1	c0003	1326	51	7	17	19	3	3	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0004	1326	29	0	0	29	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0005	1326	23	7	2	7	4	3	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0006	1326	14	14	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0007	1326	4	4	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0008	1326	2	0	2	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0009	1326	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0010	1326	1	0	0	1	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2G7_chr6_46699201_46740375	0/0	c0011	1326	1	1	0	0	0	0	copy fasta	PLA2G7	chr6	46699201	46740375
PLA2R1_chr2_159927006_160067615	1/0	c0001	4392	134	44	13	54	2	20	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0002	4392	57	1	15	37	2	2	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0003	4392	53	4	12	27	4	6	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0004	4392	19	0	4	15	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0005	4391	10	8	2	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/1	c0006	4392	6	0	4	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0007	4392	6	0	0	6	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0008	4392	4	0	1	2	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0009	4392	4	4	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0010	4392	4	1	1	1	1	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0011	4392	2	0	0	0	0	2	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0012	4392	2	0	0	2	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0013	4392	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0014	4392	2	0	1	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0015	4392	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0016	4392	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0017	4392	2	2	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0018	4392	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0019	4392	1	0	0	0	1	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0020	4392	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0021	4392	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615