JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLA2R1_chr2_159927006_160067615	0/0	c0022	4392	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0023	4392	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0024	4392	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0025	4392	1	0	1	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0026	4392	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0027	4392	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0028	4392	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0029	4392	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0030	4392	1	0	0	0	0	1	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0031	4392	1	0	0	1	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLA2R1_chr2_159927006_160067615	0/0	c0032	4391	1	1	0	0	0	0	copy fasta	PLA2R1	chr2	159927006	160067615
PLAAT1_chr3_193236222_193275855	1/1	c0001	507	379	71	72	182	8	44	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	c0002	507	9	8	1	0	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	c0003	507	7	6	1	0	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	c0004	507	1	0	0	1	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	c0005	507	1	0	0	1	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT1_chr3_193236222_193275855	0/0	c0006	507	1	1	0	0	0	0	copy fasta	PLAAT1	chr3	193236222	193275855
PLAAT2_chr11_63547770_63568379	1/1	c0001	489	372	90	80	148	14	38	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT2_chr11_63547770_63568379	0/0	c0002	489	4	4	0	0	0	0	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT2_chr11_63547770_63568379	0/0	c0003	489	2	2	0	0	0	0	copy fasta	PLAAT2	chr11	63547770	63568379
PLAAT3_chr11_63569462_63619433	1/1	c0001	489	346	93	61	139	16	35	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	c0002	489	2	0	0	0	0	2	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	c0003	489	1	1	0	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	c0004	489	1	0	1	0	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	c0005	489	1	0	0	0	0	1	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT3_chr11_63569462_63619433	0/0	c0006	489	1	0	0	1	0	0	copy fasta	PLAAT3	chr11	63569462	63619433
PLAAT4_chr11_63531808_63551458	1/1	c0001	495	321	90	71	112	16	30	copy fasta	PLAAT4	chr11	63531808	63551458
PLAAT4_chr11_63531808_63551458	0/0	c0002	495	1	0	1	0	0	0	copy fasta	PLAAT4	chr11	63531808	63551458
PLAAT5_chr11_63456404_63496167	0/1	c0001	810	194	15	37	96	11	34	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0002	810	52	33	3	14	1	1	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0003	810	41	5	10	20	0	6	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0004	810	36	15	2	17	0	2	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0005	810	8	8	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0006	810	6	6	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0007	810	5	5	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0008	810	2	2	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0009	810	2	2	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0010	810	2	0	2	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0011	810	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0012	810	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	1/0	c0013	810	1	0	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0014	810	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0015	810	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0016	810	1	0	1	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0017	810	1	0	1	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0018	810	1	0	0	1	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0019	810	1	0	0	0	0	1	copy fasta	PLAAT5	chr11	63456404	63496167
PLAAT5_chr11_63456404_63496167	0/0	c0020	810	1	1	0	0	0	0	copy fasta	PLAAT5	chr11	63456404	63496167
PLAA_chr9_26898372_26952242	1/1	c0001	2388	365	85	73	137	18	50	copy fasta	PLAA	chr9	26898372	26952242
PLAA_chr9_26898372_26952242	0/0	c0002	2388	4	4	0	0	0	0	copy fasta	PLAA	chr9	26898372	26952242