JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLI_chr18_54264517_54303234	0/0	c0015	2220	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0016	2220	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0017	2220	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0018	2220	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0019	2220	1	1	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLK_chr5_75506891_75614991	1/1	c0001	2613	225	71	43	89	6	14	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0002	2613	112	12	13	67	2	18	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0003	2613	7	4	3	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0004	2613	4	0	0	4	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0005	2613	2	0	0	2	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0006	2613	2	0	0	0	0	2	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0007	2613	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0008	2613	1	1	0	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0009	2613	1	0	0	1	0	0	copy fasta	POLK	chr5	75506891	75614991
POLK_chr5_75506891_75614991	0/0	c0010	2613	1	0	1	0	0	0	copy fasta	POLK	chr5	75506891	75614991
POLL_chr10_101573882_101593257	1/0	c0001	1728	325	64	52	157	9	42	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0002	1728	38	6	15	7	7	3	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/1	c0003	1728	21	15	2	1	2	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0004	1728	1	0	1	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0005	1728	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0006	1728	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0007	1739	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0008	1728	1	1	0	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0009	1728	1	0	0	0	0	1	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0010	1728	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0011	1728	1	0	1	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0012	1728	1	0	0	1	0	0	copy fasta	POLL	chr10	101573882	101593257
POLL_chr10_101573882_101593257	0/0	c0013	1728	1	0	1	0	0	0	copy fasta	POLL	chr10	101573882	101593257
POLM_chr7_44067062_44087530	1/0	c0001	1485	320	74	61	138	10	36	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/1	c0002	1485	65	15	16	24	4	5	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0003	1485	2	0	0	2	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0004	1485	1	1	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0005	1485	1	0	0	1	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0006	1485	1	0	0	0	0	1	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0007	1485	1	0	1	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0008	1485	1	1	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0009	1485	1	0	0	1	0	0	copy fasta	POLM	chr7	44067062	44087530
POLM_chr7_44067062_44087530	0/0	c0010	1485	1	1	0	0	0	0	copy fasta	POLM	chr7	44067062	44087530
POLN_chr4_2066918_2247121	1/0	c0001	2703	86	30	15	35	0	5	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0002	2703	57	14	12	29	0	2	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0003	2703	30	16	5	6	1	2	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/1	c0004	2703	4	1	2	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0005	2703	3	3	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0006	2703	3	3	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0007	2703	3	3	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0008	2703	1	1	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0009	2703	1	0	1	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0010	2703	1	0	0	0	1	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0011	2703	1	0	0	1	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0012	2703	1	1	0	0	0	0	copy fasta	POLN	chr4	2066918	2247121