JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POU1F1_chr3_87254404_87281584	0/0	c0004	876	1	0	1	0	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU2AF1_chr11_111347255_111384275	1/1	c0001	771	370	82	66	179	13	28	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	c0002	771	3	3	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	c0003	771	3	0	1	1	1	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	c0004	771	3	3	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	c0005	771	2	2	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	c0006	771	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	c0007	757	1	0	1	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF1_chr11_111347255_111384275	0/0	c0008	771	1	1	0	0	0	0	copy fasta	POU2AF1	chr11	111347255	111384275
POU2AF2_chr11_111240725_111291401	1/1	c0001	867	349	75	63	167	11	31	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	c0002	867	15	12	3	0	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	c0003	867	10	0	0	10	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	c0004	867	2	1	0	0	1	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	c0005	867	1	1	0	0	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	c0006	867	1	1	0	0	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	c0007	867	1	0	0	1	0	0	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF2_chr11_111240725_111291401	0/0	c0008	867	1	0	0	0	0	1	copy fasta	POU2AF2	chr11	111240725	111291401
POU2AF3_chr11_111293546_111313735	1/1	c0001	756	295	84	46	130	7	26	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	c0002	756	163	9	31	100	7	16	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	c0003	756	3	3	0	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	c0004	756	3	0	3	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	c0005	756	1	1	0	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	c0006	756	1	1	0	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	c0007	756	1	0	1	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2AF3_chr11_111293546_111313735	0/0	c0008	756	1	0	1	0	0	0	copy fasta	POU2AF3	chr11	111293546	111313735
POU2F1_chr1_167215886_167432340	1/1	c0001	2301	281	83	38	115	15	28	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	c0002	2301	7	0	6	0	1	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	c0003	2301	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	c0004	2301	1	0	0	1	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	c0005	2301	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F1_chr1_167215886_167432340	0/0	c0006	2301	1	1	0	0	0	0	copy fasta	POU2F1	chr1	167215886	167432340
POU2F2_chr19_42081110_42137446	1/0	c0001	1875	162	63	27	40	2	29	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	c0002	1875	9	3	2	1	0	3	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	c0003	1875	1	0	1	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	c0004	1875	1	0	0	1	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/1	c0005	1875	1	0	0	0	0	0	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	c0006	1875	1	0	0	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F2_chr19_42081110_42137446	0/0	c0007	1875	1	0	0	0	0	1	copy fasta	POU2F2	chr19	42081110	42137446
POU2F3_chr11_120235140_120324945	0/1	c0001	1311	241	74	42	95	1	28	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	1/0	c0002	1311	33	1	20	5	2	4	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0003	1311	33	2	2	17	1	11	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0004	1311	4	4	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0005	1311	2	2	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0006	1311	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0007	1311	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0008	1311	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0009	1311	1	0	0	0	0	1	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0010	1311	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0011	1311	1	0	0	1	0	0	copy fasta	POU2F3	chr11	120235140	120324945
POU2F3_chr11_120235140_120324945	0/0	c0012	1311	1	1	0	0	0	0	copy fasta	POU2F3	chr11	120235140	120324945