JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRAMEF20_chr1_13405450_13426328	0/0	c0015	1428	1	1	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0016	1428	1	1	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0017	1428	1	0	0	0	0	1	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0018	1428	1	0	0	1	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0019	1428	1	0	0	1	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	c0020	1428	1	1	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF25_chr1_13065774_13082884	0/0	c0001	1437	46	4	8	32	0	2	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0002	1437	40	6	7	16	4	7	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0003	1437	20	4	7	9	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0004	1437	13	0	4	8	0	1	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0005	1437	6	2	0	2	0	2	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0006	1437	3	0	0	3	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0007	1437	3	3	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0008	1437	2	0	2	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0009	1437	2	0	2	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0010	1437	2	0	0	2	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0011	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0012	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0013	1437	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0014	1437	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0015	1437	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0016	1420	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0017	1437	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0018	1437	1	0	0	0	0	1	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0019	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0020	1437	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0021	1437	1	0	0	0	0	1	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0022	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0023	1437	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0024	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0025	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0026	1437	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0027	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0028	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	c0029	1437	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF26_chr1_13143907_13161009	0/1	c0001	1437	145	26	33	68	6	11	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0002	1437	44	2	6	35	0	1	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0003	1437	8	1	2	4	0	1	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0004	1437	5	2	1	0	0	2	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0005	1437	5	0	0	5	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0006	1437	3	0	0	3	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0007	1437	2	1	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0008	1437	2	0	0	2	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0009	1437	2	2	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0010	1437	2	2	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0011	1437	2	2	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0012	1437	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0013	1437	1	0	0	1	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0014	1437	1	1	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	c0015	1437	1	0	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009