JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRDM4_chr12_107727871_107766137	0/0	c0003	2406	5	5	0	0	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0004	2406	3	3	0	0	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0005	2406	2	0	0	2	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0006	2406	2	0	0	0	0	2	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0007	2406	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0008	2406	1	0	0	0	0	1	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0009	2406	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM4_chr12_107727871_107766137	0/0	c0010	2406	1	0	0	1	0	0	copy fasta	PRDM4	chr12	107727871	107766137
PRDM5_chr4_120686915_120927726	1/1	c0001	1893	198	63	35	64	9	25	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0002	1893	46	0	12	32	0	2	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0003	1893	30	1	6	20	2	1	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0004	1893	9	6	0	3	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0005	1893	3	0	2	0	1	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0006	1893	3	3	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0007	1893	3	1	2	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0008	1893	3	2	1	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0009	1893	1	1	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0010	1893	1	1	0	0	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM5_chr4_120686915_120927726	0/0	c0011	1893	1	0	0	1	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM6_chr5_123084241_123199266	1/0	c0001	1788	169	42	26	77	4	19	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/1	c0002	1797	58	23	23	2	1	8	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0003	1788	51	5	13	29	1	3	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0004	1797	6	5	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0005	1788	4	0	0	4	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0006	1797	3	3	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0007	1797	3	3	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0008	1788	2	0	1	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0009	1794	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0010	1797	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0011	1788	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0012	1788	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0013	1788	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0014	1788	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0015	1788	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0016	1788	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0017	1788	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0018	1794	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0019	1788	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0020	1797	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0021	1788	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	c0022	1797	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM7_chr16_90051566_90082331	0/1	c0001	1479	141	20	40	49	10	21	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	1/0	c0002	1479	89	53	11	12	0	12	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0003	1479	84	2	7	64	3	8	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0004	1479	28	6	2	18	0	2	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0005	1479	18	0	16	2	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0006	1429	7	6	0	0	1	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0007	1479	2	0	0	0	1	1	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0008	1479	2	0	0	1	0	1	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	c0009	1479	2	2	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331