JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRIMA1_chr14_93713298_93793485	0/1	c0006	462	32	12	5	6	1	7	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMA1_chr14_93713298_93793485	0/0	c0007	462	1	1	0	0	0	0	copy fasta	PRIMA1	chr14	93713298	93793485
PRIMPOL_chr4_184644738_184699952	1/1	c0001	1683	242	43	43	119	10	25	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0002	1683	25	2	15	0	1	7	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0003	1674	19	17	2	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0004	1683	14	13	1	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0005	1683	11	10	1	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0006	1683	5	4	0	0	0	1	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0007	1683	3	0	2	0	1	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0008	1674	3	1	2	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0009	1683	1	0	0	0	0	1	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0010	1683	1	0	0	1	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0011	1669	1	0	0	1	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0012	1683	1	0	0	1	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0013	1683	1	1	0	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRIMPOL_chr4_184644738_184699952	0/0	c0014	1683	1	1	0	0	0	0	copy fasta	PRIMPOL	chr4	184644738	184699952
PRKAA1_chr5_40754389_40803374	1/1	c0001	1680	400	94	80	168	16	40	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA1_chr5_40754389_40803374	0/0	c0002	1680	2	0	0	0	0	2	copy fasta	PRKAA1	chr5	40754389	40803374
PRKAA2_chr1_56640314_56720335	1/1	c0001	1659	311	74	47	147	13	28	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0002	1659	47	9	3	25	0	10	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0003	1659	35	13	4	14	1	3	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0004	1659	7	0	0	7	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0005	1659	5	0	3	1	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0006	1659	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0007	1659	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0008	1659	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0009	1659	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0010	1659	1	0	1	0	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0011	1659	1	0	0	0	0	1	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAA2_chr1_56640314_56720335	0/0	c0012	1659	1	0	0	1	0	0	copy fasta	PRKAA2	chr1	56640314	56720335
PRKAB1_chr12_119663133_119686619	1/1	c0001	813	365	81	64	162	18	38	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	c0002	813	3	3	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	c0003	813	3	3	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	c0004	813	2	2	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB1_chr12_119663133_119686619	0/0	c0005	813	1	1	0	0	0	0	copy fasta	PRKAB1	chr12	119663133	119686619
PRKAB2_chr1_147150106_147177470	1/1	c0001	819	416	90	75	193	16	40	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	c0002	819	12	2	3	0	2	5	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	c0003	819	1	0	0	1	0	0	copy fasta	PRKAB2	chr1	147150106	147177470
PRKAB2_chr1_147150106_147177470	0/0	c0004	819	1	0	0	0	0	1	copy fasta	PRKAB2	chr1	147150106	147177470
PRKACA_chr19_14086688_14122762	1/1	c0001	1056	347	89	70	126	14	46	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	c0002	1056	8	0	0	8	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACA_chr19_14086688_14122762	0/0	c0003	1056	3	3	0	0	0	0	copy fasta	PRKACA	chr19	14086688	14122762
PRKACB_chr1_84139271_84243498	1/1	c0001	1197	319	88	68	116	16	29	copy fasta	PRKACB	chr1	84139271	84243498
PRKACB_chr1_84139271_84243498	0/0	c0002	1197	1	0	0	0	0	1	copy fasta	PRKACB	chr1	84139271	84243498
PRKACG_chr9_69007504_69019113	1/1	c0001	1056	327	64	67	159	13	22	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	c0002	1056	139	34	21	58	5	21	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	c0003	1056	3	0	0	0	0	3	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	c0004	1056	2	0	0	2	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	c0005	1056	2	0	0	2	0	0	copy fasta	PRKACG	chr9	69007504	69019113
PRKACG_chr9_69007504_69019113	0/0	c0006	1056	1	1	0	0	0	0	copy fasta	PRKACG	chr9	69007504	69019113