JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRKCZ_chr1_2045411_2190395	0/0	c0008	1779	1	0	0	0	0	1	copy fasta	PRKCZ	chr1	2045411	2190395
PRKD1_chr14_29571479_29932847	0/0	c0001	2739	80	35	17	21	1	6	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0002	2739	41	5	9	24	1	2	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0003	2739	8	8	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0004	2745	6	0	0	4	0	2	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0005	2745	4	1	0	3	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0006	2739	3	0	0	3	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0007	2739	2	2	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0008	2739	2	0	2	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0009	2739	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0010	2739	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0011	2739	1	0	0	1	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0012	2739	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0013	2739	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0014	2739	1	0	1	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0015	2739	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0016	2739	1	0	1	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0017	2739	1	0	0	1	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	c0018	2739	1	0	0	1	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD2_chr19_46669316_46722114	1/1	c0001	2637	362	87	76	148	11	38	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0002	2637	3	2	1	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0003	2637	2	1	1	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0004	2637	2	2	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0005	2637	1	0	0	0	1	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0006	2637	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0007	2637	1	0	0	1	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0008	2637	1	0	0	1	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0009	2637	1	0	0	1	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0010	2637	1	0	0	1	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0011	2637	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0012	2637	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	c0013	2637	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD3_chr2_37245502_37329833	0/1	c0001	2673	120	8	24	72	8	7	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0002	2673	82	2	10	68	0	2	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	1/0	c0003	2673	79	47	15	9	2	5	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0004	2673	64	9	14	32	3	6	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0005	2674	9	5	1	0	1	2	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0006	2673	8	8	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0007	2674	7	7	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0008	2673	5	0	1	4	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0009	2673	4	1	0	0	2	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0010	2673	2	0	1	0	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0011	2673	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0012	2673	1	0	0	1	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0013	2673	1	0	1	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0014	2673	1	0	1	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0015	2674	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0016	2673	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0017	2673	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	c0018	2673	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833