JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRSS56_chr2_232515388_232530716	0/0	c0017	1812	1	1	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0018	1812	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0019	1812	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0020	1812	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0021	1812	1	1	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0022	1812	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0023	1812	1	0	0	0	0	1	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0024	1812	1	1	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS57_chr19_680546_700452	0/0	c0001	849	203	51	42	75	16	19	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/1	c0002	849	149	34	29	71	0	14	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0003	849	44	10	1	30	0	3	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0004	849	16	0	0	16	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0005	849	15	0	3	4	2	6	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0006	849	3	0	0	3	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	1/0	c0007	849	2	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0008	849	1	0	0	1	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0009	849	1	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0010	849	1	0	0	0	0	1	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0011	849	1	0	0	1	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0012	849	1	1	0	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0013	849	1	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0014	849	1	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0015	849	1	0	0	0	0	1	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0016	849	1	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	c0017	849	1	0	0	1	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS58_chr7_142247143_142263058	0/1	c0001	726	128	2	26	77	7	15	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0002	726	116	24	14	63	6	9	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0003	726	89	36	19	29	1	4	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0004	726	61	18	18	9	4	12	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0005	726	6	5	1	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0006	726	2	2	0	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0007	726	1	1	0	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0008	726	1	1	0	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	c0009	726	1	1	0	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS8_chr16_31126433_31140727	1/1	c0001	1032	264	54	69	96	14	29	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	c0002	1032	34	32	2	0	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	c0003	1032	1	0	1	0	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	c0004	1032	1	0	0	0	0	1	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	c0005	1032	1	0	0	1	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	c0006	1032	1	0	0	1	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRTFDC1_chr10_24843614_24957606	1/1	c0001	678	333	90	55	140	10	36	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	c0002	678	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	c0003	678	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	c0004	678	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	c0005	678	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	c0006	678	1	0	1	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTG_chr15_55606544_55748152	1/1	c0001	3453	154	29	43	46	6	28	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0002	3453	65	22	10	26	1	6	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0003	3453	11	0	3	7	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0004	3453	11	10	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152