JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRTG_chr15_55606544_55748152	0/0	c0005	3453	6	0	3	0	2	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0006	3453	5	0	2	0	3	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0007	3453	5	5	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0008	3453	4	4	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0009	3453	3	3	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0010	3453	3	0	0	3	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0011	3453	3	3	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0012	3453	3	2	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0013	3453	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0014	3453	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0015	3453	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0016	3453	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0017	3453	1	0	0	0	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0018	3453	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0019	3453	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0020	3453	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0021	3453	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0022	3453	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	c0023	3453	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTN3_chr19_835999_853175	0/0	c0001	771	243	48	43	116	13	23	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/1	c0002	771	170	46	39	56	3	25	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/0	c0003	771	2	2	0	0	0	0	copy fasta	PRTN3	chr19	835999	853175
PRUNE1_chr1_151003449_151040713	0/1	c0001	1362	205	57	47	58	11	31	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0002	1362	59	0	3	55	0	1	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0003	1362	54	8	12	23	1	10	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	1/0	c0004	1362	52	11	9	23	4	4	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0005	1362	10	0	0	10	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0006	1362	9	6	0	1	2	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0007	1362	8	8	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0008	1362	3	3	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0009	1362	2	0	0	2	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0010	1362	2	0	1	1	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0011	1362	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0012	1362	1	0	0	1	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0013	1362	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	c0014	1362	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE2_chr9_76606376_76911114	0/0	c0001	9264	44	10	14	6	2	12	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0002	9252	35	4	6	21	0	4	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	1/0	c0003	9267	31	5	14	1	2	8	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0004	9264	24	1	2	19	0	2	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0005	9252	14	9	1	3	1	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0006	9261	7	7	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0007	9264	6	0	0	6	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/1	c0008	9264	6	0	4	0	1	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0009	9264	5	5	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0010	9252	4	4	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0011	9264	3	2	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0012	9252	3	1	0	1	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0013	9264	3	0	0	3	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0014	9267	3	3	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114