JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTK7_chr6_43071314_43166715	0/0	c0005	3213	3	0	0	0	0	3	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0006	3213	3	0	0	3	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0007	3213	2	0	0	2	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0008	3213	2	0	0	2	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0009	3213	2	0	2	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0010	3213	2	0	0	2	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0011	3213	1	0	0	1	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0012	3213	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0013	3213	1	0	0	1	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0014	3213	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0015	3213	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0016	3213	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0017	3213	1	0	1	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0018	3213	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0019	3213	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0020	3213	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0021	3213	1	0	0	0	0	1	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0022	3213	1	0	1	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTMA_chr2_231703525_231718551	1/1	c0001	333	390	92	71	162	15	48	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	c0002	333	2	0	1	0	1	0	copy fasta	PTMA	chr2	231703525	231718551
PTMS_chr12_6761363_6775952	1/1	c0001	309	452	94	84	212	16	44	copy fasta	PTMS	chr12	6761363	6775952
PTN_chr7_137222341_137348733	1/1	c0001	507	295	88	50	112	10	33	copy fasta	PTN	chr7	137222341	137348733
PTN_chr7_137222341_137348733	0/0	c0002	507	1	0	0	0	0	1	copy fasta	PTN	chr7	137222341	137348733
PTOV1_chr19_49846159_49865742	1/1	c0001	1251	273	58	59	123	8	23	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0002	1251	79	19	7	43	4	6	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0003	1251	35	0	5	17	0	13	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0004	1251	9	2	2	2	0	3	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0005	1251	8	8	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0006	1251	4	4	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0007	1251	3	3	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0008	1251	3	3	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0009	1251	2	1	1	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0010	1251	2	0	1	0	0	1	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0011	1251	2	0	0	0	0	2	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0012	1251	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0013	1251	1	0	1	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0014	1251	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0015	1251	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0016	1251	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	c0017	1251	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTP4A1_chr6_63567480_63588588	1/1	c0001	522	340	73	63	150	14	38	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	c0002	522	10	6	1	1	0	2	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	c0003	522	7	7	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	c0004	522	1	0	0	1	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	c0005	522	1	1	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A1_chr6_63567480_63588588	0/0	c0006	522	1	1	0	0	0	0	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A2_chr1_31901421_31943368	1/1	c0001	504	354	92	62	146	16	36	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A3_chr8_141387021_141437454	0/1	c0001	522	321	84	68	120	12	36	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	c0002	522	1	0	0	1	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	c0003	522	1	0	0	1	0	0	copy fasta	PTP4A3	chr8	141387021	141437454