JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PVALB_chr22_36795703_36822035	0/1	c0001	333	417	89	82	185	16	44	copy fasta	PVALB	chr22	36795703	36822035
PVALB_chr22_36795703_36822035	0/0	c0002	333	3	3	0	0	0	0	copy fasta	PVALB	chr22	36795703	36822035
PVALB_chr22_36795703_36822035	0/0	c0003	333	1	0	0	1	0	0	copy fasta	PVALB	chr22	36795703	36822035
PVALEF_chr17_81160507_81188166	0/1	c0001	405	206	10	36	119	11	29	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0002	405	93	41	18	20	3	11	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	1/0	c0003	405	82	25	19	31	4	2	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0004	405	7	7	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0005	405	7	7	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0006	405	5	5	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0007	405	3	0	0	0	0	3	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0008	405	2	0	0	2	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0009	369	1	0	1	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0010	405	1	1	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	c0011	405	1	0	0	0	0	1	copy fasta	PVALEF	chr17	81160507	81188166
PVRIG_chr7_100214949_100226490	0/1	c0001	921	224	70	36	72	11	34	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	1/0	c0002	921	141	10	32	81	2	15	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0003	923	15	0	4	10	1	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0004	921	3	0	0	0	2	1	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0005	921	2	2	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0006	921	2	2	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0007	921	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0008	923	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0009	901	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0010	921	1	1	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0011	921	1	1	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0012	921	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	c0013	921	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVR_chr19_44638910_44671162	1/1	c0001	1254	303	51	61	139	13	37	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0002	1254	63	4	12	39	1	7	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0003	1254	23	22	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0004	1254	10	10	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0005	1254	3	0	0	3	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0006	1254	3	0	1	0	2	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0007	1254	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0008	1254	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0009	1251	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0010	1254	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0011	1254	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	c0012	1254	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PWP1_chr12_107680799_107718162	1/1	c0001	1506	277	57	59	110	13	36	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0002	1506	24	2	2	15	1	4	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0003	1506	18	17	1	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0004	1506	12	0	0	11	0	1	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0005	1506	4	4	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0006	1506	2	2	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0007	1506	1	1	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0008	1506	1	0	1	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0009	1506	1	0	0	0	0	1	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0010	1506	1	1	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	c0011	1506	1	0	1	0	0	0	copy fasta	PWP1	chr12	107680799	107718162