JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB17_chr2_237569326_237595734	0/0	c0011	639	4	4	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0012	639	3	3	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0013	639	3	3	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0014	639	2	2	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0015	639	1	0	0	1	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0016	639	1	0	0	1	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0017	639	1	0	1	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0018	639	1	0	0	1	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0019	639	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0020	639	1	0	0	1	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0021	639	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0022	639	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	c0023	639	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB18_chr10_27499304_27547239	1/1	c0001	621	395	82	75	178	16	42	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	c0002	621	14	13	1	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	c0003	621	1	1	0	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB19_chr7_140399058_140432974	1/1	c0001	654	337	81	50	163	12	29	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0002	654	50	0	16	29	1	4	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0003	654	40	3	9	8	3	17	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0004	654	6	5	1	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0005	654	4	4	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0006	654	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0007	665	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0008	654	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0009	654	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	c0010	654	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB1A_chr2_65081854_65135106	1/1	c0001	618	281	85	53	95	12	34	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	c0002	618	55	0	8	45	0	2	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	c0003	618	2	2	0	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	c0004	618	1	0	1	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	c0005	618	1	1	0	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1B_chr11_66263639_66282492	1/1	c0001	606	425	92	72	201	18	40	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	c0002	606	1	0	0	1	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB20_chr13_110518066_110566722	0/1	c0001	705	206	20	32	122	5	26	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0002	705	156	39	34	63	6	14	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	1/0	c0003	705	43	23	9	5	1	4	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0004	705	13	12	1	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0005	705	3	2	1	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0006	705	1	1	0	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0007	705	1	1	0	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0008	705	1	1	0	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0009	705	1	1	0	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	c0010	705	1	0	1	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB21_chr12_71749863_71805286	1/1	c0001	678	260	65	42	114	9	28	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	c0002	678	93	6	18	60	0	9	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	c0003	678	14	14	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	c0004	678	4	0	3	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	c0005	678	4	4	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	c0006	678	3	3	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	c0007	678	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286