JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAB21_chr12_71749863_71805286	0/0	c0008	678	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB22A_chr20_58304715_58372507	1/1	c0001	585	392	88	74	172	16	40	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	c0002	585	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	c0003	585	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507
RAB23_chr6_57181992_57227307	1/1	c0001	714	196	65	37	65	9	18	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	c0002	714	50	19	9	17	1	4	copy fasta	RAB23	chr6	57181992	57227307
RAB24_chr5_177296198_177308719	1/1	c0001	612	397	100	68	167	16	44	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	c0002	612	3	0	0	3	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	c0003	599	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	c0004	612	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	c0005	632	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	c0006	612	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB25_chr1_156056160_156075504	1/1	c0001	642	344	86	61	138	12	45	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	c0002	642	1	0	0	0	0	1	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	c0003	642	1	0	0	1	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	c0004	642	1	1	0	0	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	c0005	642	1	0	0	1	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	c0006	642	1	0	1	0	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	c0007	642	1	1	0	0	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB26_chr16_2143625_2159165	1/1	c0001	771	377	98	69	151	14	43	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	c0002	771	3	0	3	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	c0003	771	2	0	0	0	2	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	c0004	771	1	0	0	0	0	1	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	c0005	771	1	0	0	1	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB27A_chr15_55197966_55294813	1/1	c0001	666	315	87	62	112	16	36	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	c0002	666	2	2	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	c0003	666	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	c0004	666	1	0	1	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	c0005	666	1	0	1	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27B_chr18_54823477_54900516	1/1	c0001	657	331	81	74	126	8	40	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	c0002	657	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	c0003	657	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	c0004	657	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB28_chr4_13362724_13489340	1/1	c0001	663	195	46	36	68	12	31	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	c0002	663	1	0	0	0	0	1	copy fasta	RAB28	chr4	13362724	13489340
RAB29_chr1_205762986_205780482	1/1	c0001	612	410	100	79	171	16	42	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	c0002	612	2	0	1	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	c0003	612	1	0	0	1	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	c0004	612	1	0	0	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB2A_chr8_60511987_60628644	1/1	c0001	639	358	90	54	166	10	36	copy fasta	RAB2A	chr8	60511987	60628644
RAB2B_chr14_21454020_21481959	1/1	c0001	651	407	89	70	185	16	45	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	c0002	651	3	3	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	c0003	651	1	0	0	1	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	c0004	651	1	0	0	0	0	1	copy fasta	RAB2B	chr14	21454020	21481959
RAB30_chr11_82968133_83076897	1/1	c0001	612	327	84	59	132	10	40	copy fasta	RAB30	chr11	82968133	83076897
RAB30_chr11_82968133_83076897	0/0	c0002	612	1	0	1	0	0	0	copy fasta	RAB30	chr11	82968133	83076897
RAB31_chr18_9703301_9867551	1/1	c0001	588	321	84	67	106	14	48	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	c0002	588	1	0	1	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB32_chr6_146538833_146559953	1/1	c0001	678	413	92	72	196	12	39	copy fasta	RAB32	chr6	146538833	146559953
RAB32_chr6_146538833_146559953	0/0	c0002	678	1	0	0	0	0	1	copy fasta	RAB32	chr6	146538833	146559953