JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAD50_chr5_132551977_132651349	0/0	c0015	3939	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0016	3939	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0017	3939	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	c0018	3939	1	0	0	0	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD51AP1_chr12_4533890_4565047	1/1	c0001	1008	253	68	50	86	7	40	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0002	1008	15	0	13	0	1	1	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0003	1008	9	9	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0004	1008	7	7	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0005	1008	2	0	1	0	0	1	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0006	1008	2	2	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0007	1008	1	0	1	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0009	1008	1	1	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	c0010	1008	1	0	1	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP2_chr2_17505579_17523440	0/0	c0001	3480	148	8	34	71	11	24	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	1/1	c0002	3480	141	67	28	33	3	8	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0003	3480	40	0	0	40	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0004	3480	7	7	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0005	3480	5	0	0	0	0	5	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0006	3480	2	1	0	0	1	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0007	3480	2	0	0	2	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0008	3480	2	0	0	2	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0009	3480	2	0	2	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0010	3480	1	0	0	1	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0011	3480	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0012	3480	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0013	3480	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0014	3480	1	0	0	0	1	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0015	3480	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0016	3480	1	0	0	0	0	1	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0017	3480	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0018	3480	1	0	0	0	0	1	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0019	3480	1	0	0	0	0	1	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	c0020	3480	1	0	0	1	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51B_chr14_67814779_68483093	0/0	c0001	1053	70	42	14	6	2	6	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	c0002	1053	5	5	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	c0003	1053	4	4	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	c0004	1053	3	3	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	c0006	1053	1	1	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51C_chr17_58687602_58740611	1/1	c0001	1131	317	79	68	120	12	36	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	c0002	1131	5	5	0	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	c0003	1131	2	0	2	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	c0004	1131	2	0	0	2	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	c0005	1131	1	0	0	1	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	c0006	1131	1	0	0	1	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	c0007	1131	1	1	0	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	c0008	1131	1	1	0	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51D_chr17_35087221_35124860	1/1	c0001	987	256	57	45	105	14	33	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0002	987	105	28	6	69	1	1	copy fasta	RAD51D	chr17	35087221	35124860