JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAD51D_chr17_35087221_35124860	0/0	c0003	987	33	1	17	6	0	9	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0004	987	6	0	4	0	1	1	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0005	987	4	4	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0006	987	4	0	4	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0007	987	2	1	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0008	987	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0009	987	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0010	987	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0011	987	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0012	987	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	c0013	987	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51_chr15_40690174_40737340	0/0	c0001	1020	387	88	69	171	12	47	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	c0002	1020	1	0	0	0	0	1	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	c0003	1020	1	0	0	1	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	c0004	1020	1	0	1	0	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD52_chr12_906736_954694	1/1	c0001	1257	375	83	69	173	12	36	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0002	1257	7	0	7	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0003	1257	6	0	0	3	0	3	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0004	1257	4	4	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0005	1257	3	3	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0006	1257	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0007	1257	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0008	1257	1	0	0	0	0	1	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0009	1257	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	c0010	1257	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD54B_chr8_94366960_94480115	1/0	c0001	2733	185	52	24	85	5	18	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/1	c0002	2733	136	26	33	63	4	9	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0003	2733	9	1	2	0	4	2	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0004	2733	7	6	1	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0005	2733	7	0	4	0	0	3	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0006	2733	6	0	0	6	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0007	2733	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0008	2733	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0009	2733	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0010	2733	1	0	0	0	1	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0011	2733	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0012	2733	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0013	2733	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0014	2733	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0015	2733	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0016	2733	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0017	2733	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	c0018	2733	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54L2_chr3_51533719_51673660	1/1	c0001	4404	257	55	51	125	8	16	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0002	4404	3	0	3	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0003	4404	3	0	0	3	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0004	4404	2	1	1	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0005	4404	2	0	1	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0006	4404	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	c0007	4404	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660