JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAET1L_chr6_150013334_150030532	0/0	c0005	741	9	3	3	0	1	2	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0006	741	7	6	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0007	741	5	5	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0008	741	5	5	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0009	741	5	5	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0010	741	3	2	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0011	741	3	3	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0012	741	2	1	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0013	741	2	0	0	2	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0014	741	2	1	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0015	741	2	2	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0016	741	2	2	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0017	741	2	1	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0018	741	2	0	0	1	0	1	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0019	741	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0020	741	1	0	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0021	741	1	0	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0022	741	1	0	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0023	741	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0024	741	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0025	741	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0026	741	1	1	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0027	741	1	1	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0028	741	1	1	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	c0029	741	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAF1_chr3_12578601_12669117	1/1	c0001	1947	246	85	58	61	12	28	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	c0002	1947	7	3	4	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	c0003	1947	4	4	0	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	c0004	1947	2	0	0	2	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	c0005	1947	2	0	2	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	c0006	1947	1	0	0	1	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAG1_chr11_36563007_36584762	1/0	c0001	3132	122	18	36	43	8	16	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/1	c0002	3132	110	11	12	72	1	13	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0003	3132	93	32	11	40	1	9	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0004	3132	26	14	9	0	3	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0005	3132	8	8	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0006	3132	7	6	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0007	3132	5	5	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0008	3132	3	0	1	0	1	1	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0009	3132	2	0	0	2	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0010	3132	2	0	0	2	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0011	3132	2	2	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0012	3132	2	0	0	2	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0013	3132	1	0	0	0	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0014	3132	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0015	3132	1	0	0	1	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0016	3132	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0017	3132	1	0	0	0	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0018	3132	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	c0019	3132	1	1	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762