JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RAG1_chr11_36563007_36584762	0/0	c0020	3132	1	0	0	0	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG2_chr11_36586943_36603236	1/1	c0001	1584	398	78	76	187	14	41	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	c0002	1584	10	10	0	0	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	c0003	1584	7	6	1	0	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	c0004	1584	1	0	0	1	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	c0005	1584	1	0	0	1	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	c0006	1584	1	0	1	0	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	c0007	1584	1	0	0	1	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	c0008	1584	1	0	0	0	0	1	copy fasta	RAG2	chr11	36586943	36603236
RAI14_chr5_34651328_34837612	1/0	c0001	2943	94	38	13	36	2	4	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0002	2943	56	4	16	26	2	8	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0003	2943	18	14	0	0	1	3	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0004	2943	16	1	2	8	2	3	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0005	2943	15	12	0	3	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0006	2943	7	0	4	1	2	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0007	2943	6	6	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0008	2943	5	0	2	0	0	3	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0009	2943	5	1	1	2	0	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/1	c0010	2943	4	0	1	0	1	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0011	2943	4	2	2	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0012	2943	3	0	0	0	2	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0013	2943	2	2	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0014	2943	2	0	2	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0015	2943	2	2	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0016	2943	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0017	2943	1	0	0	0	0	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0018	2943	1	0	1	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0019	2943	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0020	2943	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0021	2943	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0022	2943	1	0	1	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0023	2943	1	0	1	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0024	2943	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0025	2943	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0026	2943	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0027	2943	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0028	2943	1	0	0	0	0	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0029	2943	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	c0030	2943	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI1_chr17_17676458_17816453	0/1	c0001	5718	122	37	21	46	3	14	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0002	5721	56	11	26	10	6	3	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0003	5721	7	6	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0004	5718	7	4	1	0	1	1	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0005	5718	6	6	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0006	5721	6	4	2	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0007	5712	4	0	0	4	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0008	5721	4	1	1	1	0	1	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0009	5718	3	3	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0010	5718	3	0	3	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	c0011	5715	3	3	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453